» Articles » PMID: 38257251

Novichok Nerve Agents As Inhibitors of Acetylcholinesterase-In Silico Study of Their Non-Covalent Binding Affinity

Overview
Journal Molecules
Publisher MDPI
Specialty Biology
Date 2024 Jan 23
PMID 38257251
Authors
Affiliations
Soon will be listed here.
Abstract

In silico studies were performed to assess the binding affinity of selected organophosphorus compounds toward the acetylcholinesterase enzyme (AChE). Quantum mechanical calculations, molecular docking, and molecular dynamics (MD) with molecular mechanics Generalized-Born surface area (MM/GBSA) were applied to assess quantitatively differences between the binding energies of acetylcholine (ACh; the natural agonist of AChE) and neurotoxic, synthetic correlatives (so-called "Novichoks", and selected compounds from the G- and V-series). Several additional quantitative descriptors like root-mean-square fluctuation (RMSF) and the solvent accessible surface area (SASA) were briefly discussed to give-to the best of our knowledge-the first quantitative in silico description of AChE-Novichok non-covalent binding process and thus facilitate the search for an efficient and effective treatment for Novichok intoxication and in a broader sense-intoxication with other warfare nerve agents as well.

References
1.
Xu S, Wang L, Pan X . An evaluation of combined strategies for improving the performance of molecular docking. J Bioinform Comput Biol. 2021; 19(2):2150003. DOI: 10.1142/S0219720021500037. View

2.
Maier J, Martinez C, Kasavajhala K, Wickstrom L, Hauser K, Simmerling C . ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB. J Chem Theory Comput. 2015; 11(8):3696-713. PMC: 4821407. DOI: 10.1021/acs.jctc.5b00255. View

3.
Lindgren C, Forsgren N, Hoster N, Akfur C, Artursson E, Edvinsson L . Broad-Spectrum Antidote Discovery by Untangling the Reactivation Mechanism of Nerve-Agent-Inhibited Acetylcholinesterase. Chemistry. 2022; 28(40):e202200678. PMC: 9400889. DOI: 10.1002/chem.202200678. View

4.
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat T, Weissig H . The Protein Data Bank. Nucleic Acids Res. 1999; 28(1):235-42. PMC: 102472. DOI: 10.1093/nar/28.1.235. View

5.
de Castro A, Soares F, Pereira A, Silva T, Rodrigues Silva D, Mancini D . Asymmetric biodegradation of the nerve agents Sarin and VX by human dUTPase: chemometrics, molecular docking and hybrid QM/MM calculations. J Biomol Struct Dyn. 2018; 37(8):2154-2164. DOI: 10.1080/07391102.2018.1478751. View