» Articles » PMID: 38174243

Optimal Density-functional Theory Method for Zinc-amino Acid Complexes Determined by Analyzing Structural and Fourier-transform Infrared Spectroscopy Data

Overview
Journal RSC Adv
Specialty Chemistry
Date 2024 Jan 4
PMID 38174243
Authors
Affiliations
Soon will be listed here.
Abstract

Metal-amino acid complexes are important compounds for the human body. Their nutritional value and anticancer, antibacterial, and catalytic properties are the focus of several studies. Density functional theory (DFT) can be used to predict their properties by optimizing their structures and performing electron population analyses. However, conventional computational methods cannot adequately determine the parameters of polymeric metal-amino acid complexes. Therefore, intermolecular interactions of polymers must be considered to correctly predict the properties of metal-amino acid and related metal complexes. In this study, different DFT protocols were used to acquire the infrared spectra and determine interatomic distances of two zinc-amino acid complexes, Zn(Gly) and Zn(Met). The results were compared to spectroscopic and X-ray crystallographic data, revealing that the M06 and M06-L functionals and the 6-311++G(d,p) basis set produced the smallest computational errors. Our results provide a foundation for future theoretical studies on other metal-amino acid and metal-organic complexes.

References
1.
Roy L, Hay P, Martin R . Revised Basis Sets for the LANL Effective Core Potentials. J Chem Theory Comput. 2015; 4(7):1029-31. DOI: 10.1021/ct8000409. View

2.
Varadwaj P, Cukrowski I, Marques H . DFT-UX3LYP studies on the coordination chemistry of Ni2+. Part 1: Six coordinate [Ni(NH3)n(H2O)(6-n)]2+ complexes. J Phys Chem A. 2008; 112(42):10657-66. DOI: 10.1021/jp803961s. View

3.
Dudev T, Lim C . Metal-binding affinity and selectivity of nonstandard natural amino acid residues from DFT/CDM calculations. J Phys Chem B. 2009; 113(34):11754-64. DOI: 10.1021/jp904249s. View

4.
Martinez V, Aguirre M, Todaro J, Piro O, Echeverria G, Ferrer E . Azilsartan and its Zn(II) complex. Synthesis, anticancer mechanisms of action and binding to bovine serum albumin. Toxicol In Vitro. 2018; 48:205-220. DOI: 10.1016/j.tiv.2018.01.009. View

5.
Zhao Y, Truhlar D . Density functional for spectroscopy: no long-range self-interaction error, good performance for Rydberg and charge-transfer states, and better performance on average than B3LYP for ground states. J Phys Chem A. 2006; 110(49):13126-30. DOI: 10.1021/jp066479k. View