Reference Genome Resource for the Citrus Pathogen
Overview
Overview
Authors
Affiliations
Affiliations
Soon will be listed here.
Abstract
is an oomycete pathogen that infects citrus. Its occurrence in citrus-growing regions worldwide is considered a major contributor to crop losses. This study presents a high-quality genome resource for , which was generated using PacBio HiFi long-read high-throughput sequencing technology. We successfully assembled a 48.5 Mb genome containing 16,409 protein-coding genes from high-quality reads. This marks the first complete genome assembly of , providing a valuable resource to enhance the understanding of pathogenic behaviour and fungicide sensitivity of this destructive citrus pathogen.
References
1.
Retanal C, Ball B, Geddes-McAlister J
. Post-Translational Modifications Drive Success and Failure of Fungal-Host Interactions. J Fungi (Basel). 2021; 7(2).
PMC: 7914884.
DOI: 10.3390/jof7020124.
View
2.
Grams N, Ospina-Giraldo M
. Increased expression of Phytophthora sojae genes encoding membrane-degrading enzymes appears to suggest an early onset of necrotrophy during Glycine max infection. Fungal Genet Biol. 2019; 133:103268.
DOI: 10.1016/j.fgb.2019.103268.
View
3.
Yang M, Duan S, Mei X, Huang H, Chen W, Liu Y
. The Phytophthora cactorum genome provides insights into the adaptation to host defense compounds and fungicides. Sci Rep. 2018; 8(1):6534.
PMC: 5916904.
DOI: 10.1038/s41598-018-24939-2.
View
4.
Blackman L, Cullerne D, Hardham A
. Bioinformatic characterisation of genes encoding cell wall degrading enzymes in the Phytophthora parasitica genome. BMC Genomics. 2014; 15:785.
PMC: 4176579.
DOI: 10.1186/1471-2164-15-785.
View
5.
Manni M, Berkeley M, Seppey M, Simao F, Zdobnov E
. BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Mol Biol Evol. 2021; 38(10):4647-4654.
PMC: 8476166.
DOI: 10.1093/molbev/msab199.
View