Genome-wide Identification and Expression Analysis of the BURP Domain-containing Genes in

Overview

Journal Physiol Mol Biol Plants

Specialty Biology

Date 2024 Jan 1

PMID 38162916

Authors

Jiaxuan Ren

Li Feng

Lili Guo

Huimin Gou

Shixiong Lu

Juan Mao

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s12298-023-01393-7.

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References

Teerawanichpan P, Xia Q, Caldwell S, Datla R, Selvaraj G . Protein storage vacuoles of Brassica napus zygotic embryos accumulate a BURP domain protein and perturbation of its production distorts the PSV. Plant Mol Biol. 2009; 71(4-5):331-43. DOI: 10.1007/s11103-009-9541-7. View

Gan D, Jiang H, Zhang J, Zhao Y, Zhu S, Cheng B . Genome-wide analysis of BURP domain-containing genes in maize and sorghum. Mol Biol Rep. 2010; 38(7):4553-63. DOI: 10.1007/s11033-010-0587-z. View

Harshavardhan V, Son L, Seiler C, Junker A, Weigelt-Fischer K, Klukas C . AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance. PLoS One. 2014; 9(10):e110065. PMC: 4198191. DOI: 10.1371/journal.pone.0110065. View

Ding X, Hou X, Xie K, Xiong L . Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses. Planta. 2009; 230(1):149-63. DOI: 10.1007/s00425-009-0929-z. View

Cannon S, Mitra A, Baumgarten A, Young N, May G . The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 2004; 4:10. PMC: 446195. DOI: 10.1186/1471-2229-4-10. View

Son L, Tiedemann J, Rutten T, Hillmer S, Hinz G, Zank T . The BURP domain protein AtUSPL1 of Arabidopsis thaliana is destined to the protein storage vacuoles and overexpression of the cognate gene distorts seed development. Plant Mol Biol. 2009; 71(4-5):319-29. DOI: 10.1007/s11103-009-9526-6. View

Vera Hernandez P, Mendoza Onofre L, Rosas Cardenas F . Responses of sorghum to cold stress: A review focused on molecular breeding. Front Plant Sci. 2023; 14:1124335. PMC: 9996117. DOI: 10.3389/fpls.2023.1124335. View

Wang A, Xia Q, Xie W, Datla R, Selvaraj G . The classical Ubisch bodies carry a sporophytically produced structural protein (RAFTIN) that is essential for pollen development. Proc Natl Acad Sci U S A. 2003; 100(24):14487-92. PMC: 283618. DOI: 10.1073/pnas.2231254100. View

Nguyen L, Schmidt H, von Haeseler A, Minh B . IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2014; 32(1):268-74. PMC: 4271533. DOI: 10.1093/molbev/msu300. View

10.

Du H, Yang S, Liang Z, Feng B, Liu L, Huang Y . Genome-wide analysis of the MYB transcription factor superfamily in soybean. BMC Plant Biol. 2012; 12:106. PMC: 3462118. DOI: 10.1186/1471-2229-12-106. View

11.

Batchelor A, Boutilier K, Miller S, Hattori J, Bowman L, Hu M . SCB1, a BURP-domain protein gene, from developing soybean seed coats. Planta. 2002; 215(4):523-32. DOI: 10.1007/s00425-002-0798-1. View

12.

Shao Y, Wei G, Wang L, Dong Q, Zhao Y, Chen B . Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa. J Integr Plant Biol. 2011; 53(9):743-55. DOI: 10.1111/j.1744-7909.2011.01068.x. View

13.

Rosero A, Granda L, Berdugo-Cely J, Samajova O, Samaj J, Cerkal R . A Dual Strategy of Breeding for Drought Tolerance and Introducing Drought-Tolerant, Underutilized Crops into Production Systems to Enhance Their Resilience to Water Deficiency. Plants (Basel). 2020; 9(10). PMC: 7600178. DOI: 10.3390/plants9101263. View

14.

Matus J, Aquea F, Espinoza C, Vega A, Cavallini E, Dal Santo S . Inspection of the grapevine BURP superfamily highlights an expansion of RD22 genes with distinctive expression features in berry development and ABA-mediated stress responses. PLoS One. 2014; 9(10):e110372. PMC: 4199669. DOI: 10.1371/journal.pone.0110372. View

15.

Liu X, Gong Q, Zhao C, Wang D, Ye X, Zheng G . Genome-wide analysis of cytochrome P450 genes in and characterization of a CYP gene encoding flavonoid 3'-hydroxylase. Hortic Res. 2023; 10(2):uhac283. PMC: 9930397. DOI: 10.1093/hr/uhac283. View

16.

Fu L, Zhang Z, Wang H, Zhao X, Su L, Geng L . Genome-wide analysis of BURP genes and identification of a BURP-V gene RcBURP4 in Rosa chinensis. Plant Cell Rep. 2021; 41(2):395-413. DOI: 10.1007/s00299-021-02815-0. View

17.

Xu H, Li Y, Yan Y, Wang K, Gao Y, Hu Y . Genome-scale identification of soybean BURP domain-containing genes and their expression under stress treatments. BMC Plant Biol. 2010; 10:197. PMC: 2956546. DOI: 10.1186/1471-2229-10-197. View

18.

Liu H, Ma Y, Chen N, Guo S, Liu H, Guo X . Overexpression of stress-inducible OsBURP16, the β subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice. Plant Cell Environ. 2013; 37(5):1144-58. PMC: 4286026. DOI: 10.1111/pce.12223. View

19.

Sun H, Wei H, Wang H, Hao P, Gu L, Liu G . Genome-wide identification and expression analysis of the BURP domain-containing genes in Gossypium hirsutum. BMC Genomics. 2019; 20(1):558. PMC: 6615115. DOI: 10.1186/s12864-019-5948-y. View

20.

Chenna R, Sugawara H, Koike T, Lopez R, Gibson T, Higgins D . Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003; 31(13):3497-500. PMC: 168907. DOI: 10.1093/nar/gkg500. View