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Lipid Tales: Optimizing Arylomycin Membrane Anchors

Abstract

Multidrug-resistant bacteria are spreading at alarming rates, and despite extensive efforts, no new antibiotic class with activity against Gram-negative bacteria has been approved in over 50 years. LepB inhibitors (LepBi) based on the arylomycin class of natural products are a novel class of antibiotics and function by inhibiting the bacterial type I signal peptidase (SPase) in Gram-negative bacteria. One critical aspect of LepBi development involves optimization of the membrane-anchored lipophilic portion of the molecule. We therefore developed an approach that assesses the effect of this portion on the complicated equilibria of plasma protein binding, crossing the outer membrane of Gram-negative bacteria and anchoring in the bacterial inner membrane to facilitate SPase binding. Our findings provide important insights into the development of antibacterial agents where the target is associated with the inner membrane of Gram-negative bacteria.

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References
1.
Kulanthaivel P, Kreuzman A, Strege M, Belvo M, Smitka T, Clemens M . Novel lipoglycopeptides as inhibitors of bacterial signal peptidase I. J Biol Chem. 2004; 279(35):36250-8. DOI: 10.1074/jbc.M405884200. View

2.
Smith P, Koehler M, Girgis H, Yan D, Chen Y, Chen Y . Optimized arylomycins are a new class of Gram-negative antibiotics. Nature. 2018; 561(7722):189-194. DOI: 10.1038/s41586-018-0483-6. View

3.
Leadbetter M, Adams S, Bazzini B, Fatheree P, Karr D, Krause K . Hydrophobic vancomycin derivatives with improved ADME properties: discovery of telavancin (TD-6424). J Antibiot (Tokyo). 2004; 57(5):326-36. DOI: 10.7164/antibiotics.57.326. View

4.
Ghose A, Crippen G . Atomic physicochemical parameters for three-dimensional-structure-directed quantitative structure-activity relationships. 2. Modeling dispersive and hydrophobic interactions. J Chem Inf Comput Sci. 1987; 27(1):21-35. DOI: 10.1021/ci00053a005. View

5.
Nikaido H . Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev. 2003; 67(4):593-656. PMC: 309051. DOI: 10.1128/MMBR.67.4.593-656.2003. View