DNA Methylation-dependent Epigenetic Regulation of Virulence in Plants

Overview

Journal aBIOTECH

Publisher Springer

Specialty Environmental Health

Date 2023 Nov 16

PMID 37970467

Authors

Yun-Ya Chen

Chen Zhu

Jian-Hua Zhao

Ting Liu

Feng Gao

Ying-Chao Zhang

Cheng-Guo Duan

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s42994-023-00117-5.

Citing Articles

Systematic Analysis of DNA Demethylase Gene Families in Foxtail Millet ( L.) and Their Expression Variations after Abiotic Stresses.

Sun Y, Wang X, Di Y, Li J, Li K, Wei H Int J Mol Sci. 2024; 25(8).

PMID: 38674049 PMC: 11050331. DOI: 10.3390/ijms25084464.

References

Lewis Z, Adhvaryu K, Honda S, Shiver A, Selker E . Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin. Proc Natl Acad Sci U S A. 2010; 107(18):8310-5. PMC: 2889519. DOI: 10.1073/pnas.1000328107. View

Guo W, Cannon A, Lisch D . A Molecular Cloning and Sanger Sequencing-based Protocol for Detecting Site-specific DNA Methylation. Bio Protoc. 2022; 12(9):e4408. PMC: 9090521. DOI: 10.21769/BioProtoc.4408. View

Lewis Z, Adhvaryu K, Honda S, Shiver A, Knip M, Sack R . DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. PLoS Genet. 2010; 6(11):e1001196. PMC: 2973830. DOI: 10.1371/journal.pgen.1001196. View

Tamaru H, Selker E . Synthesis of signals for de novo DNA methylation in Neurospora crassa. Mol Cell Biol. 2003; 23(7):2379-94. PMC: 150737. DOI: 10.1128/MCB.23.7.2379-2394.2003. View

Li E, Zhang Y . DNA methylation in mammals. Cold Spring Harb Perspect Biol. 2014; 6(5):a019133. PMC: 3996472. DOI: 10.1101/cshperspect.a019133. View

Kouzminova E, Selker E . dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora. EMBO J. 2001; 20(15):4309-23. PMC: 149169. DOI: 10.1093/emboj/20.15.4309. View

Kim H . Disruption of RIM15 confers an increased tolerance to heavy metals in Saccharomyces cerevisiae. Biotechnol Lett. 2020; 42(7):1193-1202. DOI: 10.1007/s10529-020-02884-3. View

Westholm J, Tronnersjo S, Nordberg N, Olsson I, Komorowski J, Ronne H . Gis1 and Rph1 regulate glycerol and acetate metabolism in glucose depleted yeast cells. PLoS One. 2012; 7(2):e31577. PMC: 3283669. DOI: 10.1371/journal.pone.0031577. View

Frandsen R . A guide to binary vectors and strategies for targeted genome modification in fungi using Agrobacterium tumefaciens-mediated transformation. J Microbiol Methods. 2011; 87(3):247-62. DOI: 10.1016/j.mimet.2011.09.004. View

10.

Wang S, Xing H, Hua C, Guo H, Zhang J . An Improved Single-Step Cloning Strategy Simplifies the Agrobacterium tumefaciens-Mediated Transformation (ATMT)-Based Gene-Disruption Method for Verticillium dahliae. Phytopathology. 2016; 106(6):645-52. DOI: 10.1094/PHYTO-10-15-0280-R. View

11.

Wu X, Zhang Y . TET-mediated active DNA demethylation: mechanism, function and beyond. Nat Rev Genet. 2017; 18(9):517-534. DOI: 10.1038/nrg.2017.33. View

12.

Zhang Y, Yuan J, Zhang L, Chen C, Wang Y, Zhang G . Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis. Nat Commun. 2020; 11(1):6212. PMC: 7718874. DOI: 10.1038/s41467-020-20089-0. View

13.

Wang H, Liu T, Wang K, Duan C, Jiang J . Tetrakis(phthalocyaninato) rare-earth-cadmium-rare-earth quadruple-decker sandwich SMMs: suppression of QTM by long-distance f-f interactions. Chemistry. 2012; 18(25):7691-4. DOI: 10.1002/chem.201200552. View

14.

Zhang H, Lang Z, Zhu J . Dynamics and function of DNA methylation in plants. Nat Rev Mol Cell Biol. 2018; 19(8):489-506. DOI: 10.1038/s41580-018-0016-z. View

15.

Aramayo R, Selker E . Neurospora crassa, a model system for epigenetics research. Cold Spring Harb Perspect Biol. 2013; 5(10):a017921. PMC: 3783048. DOI: 10.1101/cshperspect.a017921. View

16.

Antequera F, Tamame M, VILLANUEVA J, Santos T . DNA methylation in the fungi. J Biol Chem. 1984; 259(13):8033-6. View

17.

Xie S, Duan C . Epigenetic regulation of plant immunity: from chromatin codes to plant disease resistance. aBIOTECH. 2023; 4(2):124-139. PMC: 10423193. DOI: 10.1007/s42994-023-00101-z. View

18.

Zhang J, Yuan J, Lin J, Chen L, You L, Chen S . Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants. Proc Natl Acad Sci U S A. 2022; 120(1):e2208525120. PMC: 9910501. DOI: 10.1073/pnas.2211155120. View

19.

Reinders A, Burckert N, Boller T, Wiemken A, de Virgilio C . Saccharomyces cerevisiae cAMP-dependent protein kinase controls entry into stationary phase through the Rim15p protein kinase. Genes Dev. 1998; 12(18):2943-55. PMC: 317170. DOI: 10.1101/gad.12.18.2943. View

20.

Deleris A, Halter T, Navarro L . DNA Methylation and Demethylation in Plant Immunity. Annu Rev Phytopathol. 2016; 54:579-603. DOI: 10.1146/annurev-phyto-080615-100308. View