Genome Characterization of Sp. Strain VNUA74, a Potential Biocontrol Against Pathogenic Fungus Spp
Overview
Overview
Journal
Microbiol Resour Announc
Publisher
American Society for Microbiology
Specialty
Microbiology
Date
2023 Nov 14
PMID
37962354
Authors
Affiliations
Affiliations
Soon will be listed here.
Abstract
The whole genome sequence of sp. strain VNUA74, isolated from soil in a banana farm in Vietnam and exhibited fungicidal effects on banana spp., was sequenced by PacBio RS II and DNBseq sequencing platforms. The complete circular genome is 7,250,076 bp with a GC content of 72.69%.
Citing Articles
Nguyen T, Nguyen T, Nguyen T, Nguyen L, Tran D, Dinh S Sci Rep. 2025; 15(1):7049.
PMID: 40016314 PMC: 11868398. DOI: 10.1038/s41598-024-83520-2.
References
1.
Delcher A, Bratke K, Powers E, Salzberg S
. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007; 23(6):673-9.
PMC: 2387122.
DOI: 10.1093/bioinformatics/btm009.
View
2.
Lowe T, Eddy S
. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64.
PMC: 146525.
DOI: 10.1093/nar/25.5.955.
View
3.
Akhter S, Aziz R, Edwards R
. PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies. Nucleic Acids Res. 2012; 40(16):e126.
PMC: 3439882.
DOI: 10.1093/nar/gks406.
View
4.
Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Neron B
. CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins. Nucleic Acids Res. 2018; 46(W1):W246-W251.
PMC: 6030898.
DOI: 10.1093/nar/gky425.
View
5.
Koren S, Walenz B, Berlin K, Miller J, Bergman N, Phillippy A
. Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation. Genome Res. 2017; 27(5):722-736.
PMC: 5411767.
DOI: 10.1101/gr.215087.116.
View