» Articles » PMID: 37960061

Genome Analysis of and Its Potential Progenitor Species Using Oligo-FISH

Overview
Journal Plants (Basel)
Date 2023 Nov 14
PMID 37960061
Authors
Affiliations
Soon will be listed here.
Abstract

The genome composition of intermediate wheatgrass (IWG) is complex and continues to be a subject of investigation. In this study, molecular cytogenetics were used to investigate the karyotype composition of and its relative diploid species. St-80 developed from and pDb12H developed from were used as probes in fluorescence in situ hybridization (FISH) to classify the chromosomes of into three groups, expressed as . A combined multiplex oligonucleotide probe, including pSc119.2-1, (GAA), AFA-3, AFA-4, pAs1-1, Pas1-3, pAs1-4, and pAs1-6, was used to establish the FISH karyotype of ten accessions of . Variability among and within the studied accessions of intermediate wheatgrass was observed in their FISH patterns. Results of this study led to the conclusions that had largely been contributed from , but not the present-day ; IWG had only one genome, , which was related to either or ; and was contributed from the genus by hybridization with or .

Citing Articles

The Construction of a Standard Karyotype of Intermediate Wheatgrass and Its Potential Progenitor Species.

Wang L, Liang S, Qi F, Bao Y, Wang R, Li X Plants (Basel). 2025; 14(2).

PMID: 39861549 PMC: 11769444. DOI: 10.3390/plants14020196.


Comparative Characterization of and Based on Their Repeatome Peculiarities.

Kroupin P, Yurkina A, Ulyanov D, Karlov G, Divashuk M Plants (Basel). 2023; 12(24).

PMID: 38140496 PMC: 10747672. DOI: 10.3390/plants12244169.

References
1.
Deng C, Bai L, Fu S, Yin W, Zhang Y, Chen Y . Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium. PLoS One. 2013; 8(8):e72564. PMC: 3743814. DOI: 10.1371/journal.pone.0072564. View

2.
Cseh A, Yang C, Hubbart-Edwards S, Scholefield D, Ashling S, Burridge A . Development and validation of an exome-based SNP marker set for identification of the St, J and J genomes of Thinopyrym intermedium in a wheat background. Theor Appl Genet. 2019; 132(5):1555-1570. PMC: 6476854. DOI: 10.1007/s00122-019-03300-9. View

3.
Wang R, Zhang X . Characterization of the translocated chromosome using fluorescence in situ hybridization and random amplified polymorphic DNA on two Triticum aestivum-Thinopyrum intermedium translocation lines resistant to wheat streak mosaic or barley yellow dwarf.... Chromosome Res. 1996; 4(8):583-7. DOI: 10.1007/BF02261721. View

4.
Kantarski T, Larson S, Zhang X, DeHaan L, Borevitz J, Anderson J . Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing. Theor Appl Genet. 2016; 130(1):137-150. DOI: 10.1007/s00122-016-2799-7. View

5.
Chen Q . Detection of alien chromatin introgression from Thinopyrum into wheat using S genomic DNA as a probe--a landmark approach for Thinopyrum genome research. Cytogenet Genome Res. 2005; 109(1-3):350-9. DOI: 10.1159/000082419. View