» Articles » PMID: 37903921

Soil Microbiome Engineering for Sustainability in a Changing Environment

Overview
Journal Nat Biotechnol
Specialty Biotechnology
Date 2023 Oct 31
PMID 37903921
Authors
Affiliations
Soon will be listed here.
Abstract

Recent advances in microbial ecology and synthetic biology have the potential to mitigate damage caused by anthropogenic activities that are deleteriously impacting Earth's soil ecosystems. Here, we discuss challenges and opportunities for harnessing natural and synthetic soil microbial communities, focusing on plant growth promotion under different scenarios. We explore current needs for microbial solutions in soil ecosystems, how these solutions are being developed and applied, and the potential for new biotechnology breakthroughs to tailor and target microbial products for specific applications. We highlight several scientific and technological advances in soil microbiome engineering, including characterization of microbes that impact soil ecosystems, directing how microbes assemble to interact in soil environments, and the developing suite of gene-engineering approaches. This Review underscores the need for an interdisciplinary approach to understand the composition, dynamics and deployment of beneficial soil microbiomes to drive efforts to mitigate or reverse environmental damage by restoring and protecting healthy soil ecosystems.

Citing Articles

Microbiome Engineering for Sustainable Rice Production: Strategies for Biofertilization, Stress Tolerance, and Climate Resilience.

Misu I, Kayess M, Siddiqui M, Gupta D, Islam M, Islam T Microorganisms. 2025; 13(2).

PMID: 40005600 PMC: 11857137. DOI: 10.3390/microorganisms13020233.


Root rot in medicinal plants: a review of extensive research progress.

Han Y, Sun T, Tang Y, Yang M, Gao W, Wang L Front Plant Sci. 2025; 15:1504370.

PMID: 39963361 PMC: 11830675. DOI: 10.3389/fpls.2024.1504370.


Rhizobacteria protective hydrogel to promote plant growth and adaption to acidic soil.

Feng Q, Luo Y, Liang M, Cao Y, Wang L, Liu C Nat Commun. 2025; 16(1):1684.

PMID: 39956869 PMC: 11830790. DOI: 10.1038/s41467-025-56988-3.


Advanced technologies for reducing greenhouse gas emissions from rice fields: Is hybrid rice the game changer?.

Hosseiniyan Khatibi S, Adviento-Borbe M, Dimaano N, Radanielson A, Ali J Plant Commun. 2025; 6(2):101224.

PMID: 39936846 PMC: 11897460. DOI: 10.1016/j.xplc.2024.101224.


Concurrent common fungal networks formed by different guilds of fungi.

Rillig M, Lehmann A, Mounts I, Bock B New Phytol. 2025; 246(1):33-38.

PMID: 39834013 PMC: 11883043. DOI: 10.1111/nph.20418.


References
1.
Vejan P, Abdullah R, Khadiran T, Ismail S, Boyce A . Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability-A Review. Molecules. 2016; 21(5). PMC: 6273255. DOI: 10.3390/molecules21050573. View

2.
Gong T, Xu X, Dang Y, Kong A, Wu Y, Liang P . An engineered Pseudomonas putida can simultaneously degrade organophosphates, pyrethroids and carbamates. Sci Total Environ. 2018; 628-629:1258-1265. DOI: 10.1016/j.scitotenv.2018.02.143. View

3.
Rajkumar M, Ae N, Prasad M, Freitas H . Potential of siderophore-producing bacteria for improving heavy metal phytoextraction. Trends Biotechnol. 2010; 28(3):142-9. DOI: 10.1016/j.tibtech.2009.12.002. View

4.
Bhattacharyya S, Ros G, Furtak K, Iqbal H, Parra-Saldivar R . Soil carbon sequestration - An interplay between soil microbial community and soil organic matter dynamics. Sci Total Environ. 2022; 815:152928. DOI: 10.1016/j.scitotenv.2022.152928. View

5.
Jansson J, Tas N . The microbial ecology of permafrost. Nat Rev Microbiol. 2014; 12(6):414-25. DOI: 10.1038/nrmicro3262. View