» Articles » PMID: 37786730

The Gap-free Genome of Mulberry Elucidates the Architecture and Evolution of Polycentric Chromosomes

Overview
Journal Hortic Res
Date 2023 Oct 3
PMID 37786730
Authors
Affiliations
Soon will be listed here.
Abstract

Mulberry is a fundamental component of the global sericulture industry, and its positive impact on our health and the environment cannot be overstated. However, the mulberry reference genomes reported previously remained unassembled or unplaced sequences. Here, we report the assembly and analysis of the telomere-to-telomere gap-free reference genome of the mulberry species, , which has emerged as an important reference in mulberry gene function research and genetic improvement. The mulberry gap-free reference genome produced here provides an unprecedented opportunity for us to study the structure and function of centromeres. Our results revealed that all mulberry centromeric regions share conserved centromeric satellite repeats with different copies. Strikingly, we found that is a species with polycentric chromosomes and the only reported polycentric chromosome species up to now. We propose a compelling model that explains the formation mechanism of new centromeres and addresses the unsolved scientific question of the chromosome fusion-fission cycle in mulberry species. Our study sheds light on the functional genomics, chromosome evolution, and genetic improvement of mulberry species.

Citing Articles

Advancements and strategies of genetic improvement in cassava ( Crantz): from conventional to genomic approaches.

Xiao L, Cheng D, Ou W, Chen X, Rabbi I, Wang W Hortic Res. 2025; 12(3):uhae341.

PMID: 40061801 PMC: 11886850. DOI: 10.1093/hr/uhae341.


16S rRNA Sequencing Analysis Uncovers Dose-Dependent Cupric Chloride Effects on Silkworm Gut Microbiome Composition and Diversity.

Rong W, Wei Y, Chen Y, Huang L, Huang S, Lv Y Animals (Basel). 2025; 14(24.

PMID: 39765538 PMC: 11672621. DOI: 10.3390/ani14243634.


Molecular Mechanisms of Heterosis and Its Applications in Tree Breeding: Progress and Perspectives.

Li Z, Zhao Y, Luo K Int J Mol Sci. 2024; 25(22).

PMID: 39596408 PMC: 11594601. DOI: 10.3390/ijms252212344.


MGCPdb, a collective resource for mulberry genome size, chromosome number, and ploidy.

Wang H, Liu J, Xu X, Li Y, Yuan J, Zeng Y For Res (Fayettev). 2024; 4:e027.

PMID: 39524427 PMC: 11524241. DOI: 10.48130/forres-0024-0024.


Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal insights into the evolutionary transition to holocentricity.

Mata-Sucre Y, Kratka M, Oliveira L, Neumann P, Macas J, Schubert V Nat Commun. 2024; 15(1):9565.

PMID: 39500889 PMC: 11538461. DOI: 10.1038/s41467-024-53944-5.


References
1.
Song J, Xie W, Wang S, Guo Y, Koo D, Kudrna D . Two gap-free reference genomes and a global view of the centromere architecture in rice. Mol Plant. 2021; 14(10):1757-1767. DOI: 10.1016/j.molp.2021.06.018. View

2.
Macas J, Robledillo L, Kreplak J, Novak P, Koblizkova A, Vrbova I . Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS Genet. 2023; 19(2):e1010633. PMC: 10027222. DOI: 10.1371/journal.pgen.1010633. View

3.
Zhang Y, Fu J, Wang K, Han X, Yan T, Su Y . The telomere-to-telomere gap-free genome of four rice parents reveals SV and PAV patterns in hybrid rice breeding. Plant Biotechnol J. 2022; 20(9):1642-1644. PMC: 9398309. DOI: 10.1111/pbi.13880. View

4.
Li H, Yang Z, Zeng Q, Wang S, Luo Y, Huang Y . Abnormal expression of disrupts a flavonoid homeostasis network, causing differences in pigment composition among mulberry fruits. Hortic Res. 2020; 7(1):83. PMC: 7261776. DOI: 10.1038/s41438-020-0302-8. View

5.
Hofstatter P, Thangavel G, Lux T, Neumann P, Vondrak T, Novak P . Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell. 2022; 185(17):3153-3168.e18. DOI: 10.1016/j.cell.2022.06.045. View