Fungi of Quarantine Concern for China I:

Overview

Journal Persoonia

Date 2023 Sep 11

PMID 37693796

Authors

P Zhao

P W Crous

L W Hou

W J Duan

L Cai

Z Y Ma

F Liu

Affiliations

Soon will be listed here.

Abstract

The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in , and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely comb. nov. (syn. ) On the basis of phylogenetic analyses and morphological comparisons, a new genus is introduced to accommodate the monotypic species comb. nov. (syn. ), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (, , , ), three epitypes (, , ), and two neotypes (, ) are designated to stabilise the use of these names. A further four reference strains are introduced for , , , and . In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including , , , , , , , , , , , , , , , , and . : Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia 47: 45-105. https://doi.org/10.3767/persoonia.2021.47.02.

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References

Quaedvlieg W, Verkley G, Shin H, Barreto R, Alfenas A, Swart W . Sizing up Septoria. Stud Mycol. 2013; 75(1):307-90. PMC: 3713890. DOI: 10.3114/sim0017. View

Lynch S, Eskalen A, Zambino P, Mayorquin J, Wang D . Identification and pathogenicity of Botryosphaeriaceae species associated with coast live oak (Quercus agrifolia) decline in southern California. Mycologia. 2012; 105(1):125-40. DOI: 10.3852/12-047. View

Liu F, Cai L, Crous P, Damm U . The Colletotrichum gigasporum species complex. Persoonia. 2015; 33:83-97. PMC: 4312939. DOI: 10.3767/003158514X684447. View

Junior B, de Macedo D, Barreto R, Evans H, Mattos C, Maffia L . Erasing the past: a new identity for the Damoclean pathogen causing South American leaf blight of rubber. PLoS One. 2014; 9(8):e104750. PMC: 4134235. DOI: 10.1371/journal.pone.0104750. View

De Gruyter J, Woudenberg J, Aveskamp M, Verkley G, Groenewald J, Crous P . Redisposition of phoma-like anamorphs in Pleosporales. Stud Mycol. 2013; 75(1):1-36. PMC: 3713885. DOI: 10.3114/sim0004. View

Groenewald M, Barnes I, Bradshaw R, Brown A, Dale A, Groenewald J . Characterization and distribution of mating type genes in the dothistroma needle blight pathogens. Phytopathology. 2008; 97(7):825-34. DOI: 10.1094/PHYTO-97-7-0825. View

Tian S, Chen Y, Zou M, Xue Q . First Report of Helminthosporium solani Causing Silver Scurf of Potato in Hebei Province, North China. Plant Dis. 2019; 91(4):460. DOI: 10.1094/PDIS-91-4-0460B. View

Lawrence D, Gannibal P, Peever T, Pryor B . The sections of Alternaria: formalizing species-group concepts. Mycologia. 2013; 105(3):530-46. DOI: 10.3852/12-249. View

Phillips A, Alves A, Pennycook S, Johnston P, Ramaley A, Akulov A . Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia. 2010; 21:29-55. PMC: 2846129. DOI: 10.3767/003158508X340742. View

10.

Kim Y, Caiazzo R, Sikdar P, Xiao C . First Report of Sphaeropsis Rot of Apple Caused by Sphaeropsis pyriputrescens in New York. Plant Dis. 2019; 97(9):1257. DOI: 10.1094/PDIS-03-13-0320-PDN. View

11.

Shen M, Zhang J, Zhao L, Groenewald J, Crous P, Zhang Y . . Stud Mycol. 2020; 96:185-308. PMC: 7452091. DOI: 10.1016/j.simyco.2020.03.001. View

12.

Crous P, Summerell B, Carnegie A, Wingfield M, Hunter G, Burgess T . Unravelling Mycosphaerella: do you believe in genera?. Persoonia. 2010; 23:99-118. PMC: 2802725. DOI: 10.3767/003158509X479487. View

13.

Guo L, Zhu X, Hu C, Ristaino J . Genetic structure of Phytophthora infestans populations in China indicates multiple migration events. Phytopathology. 2010; 100(10):997-1006. DOI: 10.1094/PHYTO-05-09-0126. View

14.

Liu F, Wang J, Li H, Wang W, Cai L . spp. on . Fungal Syst Evol. 2020; 4:43-57. PMC: 7241682. DOI: 10.3114/fuse.2019.04.05. View

15.

Braun U, Nakashima C, Crous P . Cercosporoid fungi (Mycosphaerellaceae) 1. Species on other fungi, Pteridophyta and Gymnospermae. IMA Fungus. 2014; 4(2):265-345. PMC: 3905945. DOI: 10.5598/imafungus.2013.04.02.12. View

16.

Bensch K, Braun U, Groenewald J, Crous P . The genus Cladosporium. Stud Mycol. 2012; 72(1):1-401. PMC: 3390897. DOI: 10.3114/sim0003. View

17.

Inderbitzin P, Subbarao K . Verticillium systematics and evolution: how confusion impedes Verticillium wilt management and how to resolve it. Phytopathology. 2014; 104(6):564-74. DOI: 10.1094/PHYTO-11-13-0315-IA. View

18.

ODonnell K, Kistler H, Cigelnik E, Ploetz R . Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proc Natl Acad Sci U S A. 1998; 95(5):2044-9. PMC: 19243. DOI: 10.1073/pnas.95.5.2044. View

19.

McDonald M, Razavi M, Friesen T, Brunner P, McDonald B . Phylogenetic and population genetic analyses of Phaeosphaeria nodorum and its close relatives indicate cryptic species and an origin in the Fertile Crescent. Fungal Genet Biol. 2012; 49(11):882-95. DOI: 10.1016/j.fgb.2012.08.001. View

20.

Chen Q, Jiang J, Zhang G, Cai L, Crous P . Resolving the Phoma enigma. Stud Mycol. 2016; 82:137-217. PMC: 4774273. DOI: 10.1016/j.simyco.2015.10.003. View