» Articles » PMID: 37685972

C-H Groups As Donors in Hydrogen Bonds: A Historical Overview and Occurrence in Proteins and Nucleic Acids

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2023 Sep 9
PMID 37685972
Authors
Affiliations
Soon will be listed here.
Abstract

Hydrogen bonds constitute a unique type of non-covalent interaction, with a critical role in biology. Until fairly recently, the canonical view held that these bonds occur between electronegative atoms, typically O and N, and that they are mostly electrostatic in nature. However, it is now understood that polarized C-H groups may also act as hydrogen bond donors in many systems, including biological macromolecules. First recognized from physical chemistry studies, C-H…X bonds were visualized with X-ray crystallography sixty years ago, although their true significance has only been recognized in the last few decades. This review traces the origins of the field and describes the occurrence and significance of the most important C-H…O bonds in proteins and nucleic acids.

Citing Articles

Structural Catalytic Core in Subtilisin-like Proteins and Its Comparison to Trypsin-like Serine Proteases and Alpha/Beta-Hydrolases.

Denesyuk A, Denessiouk K, Johnson M, Uversky V Int J Mol Sci. 2024; 25(22).

PMID: 39595929 PMC: 11593635. DOI: 10.3390/ijms252211858.


Formation of Planar π-Conjugated Sheets in Cocrystals of Bis(iodoethynyl)pyridines and Bipyrimidylalkynes: Cooperative C-H···N Hydrogen Bonds and sp-C-I···N Halogen Bonds.

Lang L, Bowling N, Bosch E Cryst Growth Des. 2024; 24(22):9727-9734.

PMID: 39583626 PMC: 11583210. DOI: 10.1021/acs.cgd.4c01264.


Diverse Self-Assembled Molecular Architectures Promoted by C-H···O and C-H···Cl Hydrogen Bonds in a Triad of α-Diketone, α-Ketoimine, and an Imidorhenium Complex: A Unified Analysis Based on XRD, NEDA, SAPT, QTAIM, and IBSI Studies.

Sinha A, Sen S, Singh T, Ghosh A, Saha S, Bandyopadhyay K ACS Omega. 2024; 9(45):45518-45536.

PMID: 39554419 PMC: 11561771. DOI: 10.1021/acsomega.4c07702.


Optimizing beet seed germination via dielectric barrier discharge plasma parameters.

Mohajer M, Khademi A, Rahmani M, Monfaredi M, Hamidi A, Mirjalili M Heliyon. 2024; 10(21):e40020.

PMID: 39553550 PMC: 11565412. DOI: 10.1016/j.heliyon.2024.e40020.


UCBShift 2.0: Bridging the Gap from Backbone to Side Chain Protein Chemical Shift Prediction for Protein Structures.

Ptaszek A, Li J, Konrat R, Platzer G, Head-Gordon T J Am Chem Soc. 2024; 146(46):31733-31745.

PMID: 39531038 PMC: 11784523. DOI: 10.1021/jacs.4c10474.


References
1.
Ferguson F, Gray N . Kinase inhibitors: the road ahead. Nat Rev Drug Discov. 2018; 17(5):353-377. DOI: 10.1038/nrd.2018.21. View

2.
Newberry R, Raines R . Secondary Forces in Protein Folding. ACS Chem Biol. 2019; 14(8):1677-1686. PMC: 6995338. DOI: 10.1021/acschembio.9b00339. View

3.
Wilkins M, STOKES A, Wilson H . Molecular structure of deoxypentose nucleic acids. Nature. 1953; 171(4356):738-40. DOI: 10.1038/171738a0. View

4.
Corey R, PAULING L . Specific hydrogen-bond formation between pyramidines and purines in deoxyribonucleic acids. Arch Biochem Biophys. 1956; 65(1):164-81. DOI: 10.1016/0003-9861(56)90185-0. View

5.
Bella J, Brodsky B, Berman H . Hydration structure of a collagen peptide. Structure. 1995; 3(9):893-906. DOI: 10.1016/S0969-2126(01)00224-6. View