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Comprehensive Review on Drug-target Interaction Prediction - Latest Developments and Overview

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Date 2023 Sep 8
PMID 37680152
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Abstract

Drug-target interactions (DTIs) are an important part of the drug development process. When the drug (a chemical molecule) binds to a target (proteins or nucleic acids), it modulates the biological behavior/function of the target, returning it to its normal state. Predicting DTIs plays a vital role in the drug discovery (DD) process as it has the potential to enhance efficiency and reduce costs. However, DTI prediction poses significant challenges and expenses due to the time-consuming and costly nature of experimental assays. As a result, researchers have increased their efforts to identify the association between medications and targets in the hopes of speeding up drug development and shortening the time to market. This paper provides a detailed discussion of the initial stage in drug discovery, namely drug-target interactions. It focuses on exploring the application of machine learning methods within this step. Additionally, we aim to conduct a comprehensive review of relevant papers and databases utilized in this field. Drug target interaction prediction covers a wide range of applications: drug discovery, prediction of adverse effects and drug repositioning. The prediction of drugtarget interactions can be categorized into three main computational methods: docking simulation approaches, ligand-based methods, and machine-learning techniques.

Citing Articles

MCF-DTI: Multi-Scale Convolutional Local-Global Feature Fusion for Drug-Target Interaction Prediction.

Wang J, He R, Wang X, Li H, Lu Y Molecules. 2025; 30(2).

PMID: 39860144 PMC: 11767603. DOI: 10.3390/molecules30020274.

References
1.
Varnek A, Baskin I . Chemoinformatics as a Theoretical Chemistry Discipline. Mol Inform. 2016; 30(1):20-32. DOI: 10.1002/minf.201000100. View

2.
Kapetanovic I . Computer-aided drug discovery and development (CADDD): in silico-chemico-biological approach. Chem Biol Interact. 2007; 171(2):165-76. PMC: 2253724. DOI: 10.1016/j.cbi.2006.12.006. View

3.
Patel L, Shukla T, Huang X, Ussery D, Wang S . Machine Learning Methods in Drug Discovery. Molecules. 2020; 25(22). PMC: 7696134. DOI: 10.3390/molecules25225277. View

4.
Helleboid S, Haug C, Lamottke K, Zhou Y, Wei J, Daix S . The identification of naturally occurring neoruscogenin as a bioavailable, potent, and high-affinity agonist of the nuclear receptor RORα (NR1F1). J Biomol Screen. 2013; 19(3):399-406. DOI: 10.1177/1087057113497095. View

5.
Klebe G . Virtual ligand screening: strategies, perspectives and limitations. Drug Discov Today. 2006; 11(13-14):580-94. PMC: 7108249. DOI: 10.1016/j.drudis.2006.05.012. View