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Molecular Design of FRET Probes Based on Domain Rearrangement of Protein Disulfide Isomerase for Monitoring Intracellular Redox Status

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2023 Aug 26
PMID 37629048
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Abstract

Multidomain proteins can exhibit sophisticated functions based on cooperative interactions and allosteric regulation through spatial rearrangements of the multiple domains. This study explored the potential of using multidomain proteins as a basis for Förster resonance energy transfer (FRET) biosensors, focusing on protein disulfide isomerase (PDI) as a representative example. PDI, a well-studied multidomain protein, undergoes redox-dependent conformational changes, enabling the exposure of a hydrophobic surface extending across the ' and ' domains that serves as the primary binding site for substrates. Taking advantage of the dynamic domain rearrangements of PDI, we developed FRET-based biosensors by fusing the ' and ' domains of thermophilic fungal PDI with fluorescent proteins as the FRET acceptor and donor, respectively. Both experimental and computational approaches were used to characterize FRET efficiency in different redox states. In vitro and in vivo evaluations demonstrated higher FRET efficiency of this biosensor in the oxidized form, reflecting the domain rearrangement and its responsiveness to intracellular redox environments. This novel approach of exploiting redox-dependent domain dynamics in multidomain proteins offers promising opportunities for designing innovative FRET-based biosensors with potential applications in studying cellular redox regulation and beyond.

References
1.
Abraham B, Santala V, Tkachenko N, Karp M . Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level. Anal Bioanal Chem. 2014; 406(28):7195-204. DOI: 10.1007/s00216-014-8165-1. View

2.
Goedhart J, van Weeren L, Hink M, Vischer N, Jalink K, Gadella Jr T . Bright cyan fluorescent protein variants identified by fluorescence lifetime screening. Nat Methods. 2010; 7(2):137-9. DOI: 10.1038/nmeth.1415. View

3.
Apic G, Huber W, Teichmann S . Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination. J Struct Funct Genomics. 2003; 4(2-3):67-78. DOI: 10.1023/a:1026113408773. View

4.
Nagai T, Yamada S, Tominaga T, Ichikawa M, Miyawaki A . Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins. Proc Natl Acad Sci U S A. 2004; 101(29):10554-9. PMC: 490022. DOI: 10.1073/pnas.0400417101. View

5.
Gobl C, Madl T, Simon B, Sattler M . NMR approaches for structural analysis of multidomain proteins and complexes in solution. Prog Nucl Magn Reson Spectrosc. 2014; 80:26-63. DOI: 10.1016/j.pnmrs.2014.05.003. View