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Description and Phylogenetic Analysis of the Complete Mitochondrial Genome in Provides New Insights into the Molecular Classification of the Family Haemogamasidae

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Journal Parasitology
Specialty Parasitology
Date 2023 Jul 3
PMID 37395062
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Abstract

In this study, the mitochondrial genome of , which parasitizes , was sequenced and assembled to fill the gap in understanding the molecular evolution of the genus . The mitochondrial genome is a double-stranded DNA molecule with a length of 14 882 bp, with a distinct AT preference for base composition and a notably higher AT content than GC content. The arrangement between genes is relatively compact, with a total of 10 gene intergenic regions and 12 gene overlap regions. All protein-coding genes had a typical ATN initiation codon, and only 2 protein-coding genes had an incomplete termination codon T. Out of the 13 protein-coding genes, the 5 most frequently used codons ended in A/U, with only 1 codon ending in G/C had an relative synonymous codon usage value >1. Except for and , which lacked the D arm, all other tRNAs were able to form a typical cloverleaf structure; and there were a total of 38 mismatches in the folding process of tRNA genes. Unlike the gene arrangement order of the arthropod hypothetical ancestor, the mitochondrial genome underwent fewer rearrangements, mainly near tRNA genes and control regions. Both the maximum likelihood tree and the Bayesian tree showed that the family Haemogamasidae is most closely related to the family Dermanyssidae. The results not only provide a theoretical basis for studying the phylogenetic relationships of the genus , but also provide molecular evidence that the family Haemogamasidae does not belong to the subfamily Laelapidae.

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