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Reorientation of INO80 on Hexasomes Reveals Basis for Mechanistic Versatility

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Journal Science
Specialty Science
Date 2023 Jun 29
PMID 37384669
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Abstract

Unlike other chromatin remodelers, INO80 preferentially mobilizes hexasomes, which can form during transcription. Why INO80 prefers hexasomes over nucleosomes remains unclear. Here, we report structures of INO80 bound to a hexasome or a nucleosome. INO80 binds the two substrates in substantially different orientations. On a hexasome, INO80 places its ATPase subunit, Ino80, at superhelical location -2 (SHL -2), in contrast to SHL -6 and SHL -7, as previously seen on nucleosomes. Our results suggest that INO80 action on hexasomes resembles action by other remodelers on nucleosomes such that Ino80 is maximally active near SHL -2. The SHL -2 position also plays a critical role for nucleosome remodeling by INO80. Overall, the mechanistic adaptations used by INO80 for preferential hexasome sliding imply that subnucleosomal particles play considerable regulatory roles.

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References
1.
Willhoft O, Ghoneim M, Lin C, Chua E, Wilkinson M, Chaban Y . Structure and dynamics of the yeast SWR1-nucleosome complex. Science. 2018; 362(6411). DOI: 10.1126/science.aat7716. View

2.
Zofall M, Persinger J, Kassabov S, Bartholomew B . Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nat Struct Mol Biol. 2006; 13(4):339-46. DOI: 10.1038/nsmb1071. View

3.
Sundaramoorthy R, Hughes A, El-Mkami H, Norman D, Ferreira H, Owen-Hughes T . Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome. Elife. 2018; 7. PMC: 6118821. DOI: 10.7554/eLife.35720. View

4.
Kireeva M, Walter W, Tchernajenko V, Bondarenko V, Kashlev M, Studitsky V . Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription. Mol Cell. 2002; 9(3):541-52. DOI: 10.1016/s1097-2765(02)00472-0. View

5.
Saha A, Wittmeyer J, Cairns B . Chromatin remodeling through directional DNA translocation from an internal nucleosomal site. Nat Struct Mol Biol. 2005; 12(9):747-55. DOI: 10.1038/nsmb973. View