The Micronuclear Histone H3 Clipping in the Unicellular Eukaryote

Overview

Journal Mar Life Sci Technol

Date 2023 Apr 20

PMID 37078088

Authors

Fan Wei

Bo Pan

Jinghan Diao

Yuanyuan Wang

Yalan Sheng

Shan Gao

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s42995-022-00151-0.

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References

Xu J, Zhao X, Mao F, Basrur V, Ueberheide B, Chait B . A Polycomb repressive complex is required for RNAi-mediated heterochromatin formation and dynamic distribution of nuclear bodies. Nucleic Acids Res. 2021; 49(10):5407-5425. PMC: 8191774. DOI: 10.1093/nar/gkaa1262. View

Allis C, Wiggins J . Proteolytic processing of micronuclear H3 and histone phosphorylation during conjugation in Tetrahymena thermophila. Exp Cell Res. 1984; 153(2):287-98. DOI: 10.1016/0014-4827(84)90601-3. View

Jiang L, Wang C, Zhuang W, Li S, Hu X . Taxonomy, phylogeny, and geographical distribution of the little-known Helicoprorodon multinucleatum Dragesco, 1960 (Ciliophora, Haptorida) and key to species within the genus. Eur J Protistol. 2021; 78:125769. DOI: 10.1016/j.ejop.2021.125769. View

Mishra R, Kanungo M . Alterations in histones of the liver and oviduct of Japanese quail during aging. Mol Biol Rep. 1994; 20(1):15-8. DOI: 10.1007/BF00999850. View

Liu H, Wang C, Lee S, Deng Y, Wither M, Oh S . Clipping of arginine-methylated histone tails by JMJD5 and JMJD7. Proc Natl Acad Sci U S A. 2017; 114(37):E7717-E7726. PMC: 5604019. DOI: 10.1073/pnas.1706831114. View

Allis C, Gorovsky M . Histone phosphorylation in macro- and micronuclei of Tetrahymena thermophila. Biochemistry. 1981; 20(13):3828-33. DOI: 10.1021/bi00516a025. View

Allis C, Allen R, Wiggins J, Chicoine L, RICHMAN R . Proteolytic processing of h1-like histones in chromatin: a physiologically and developmentally regulated event in Tetrahymena micronuclei. J Cell Biol. 1984; 99(5):1669-77. PMC: 2113348. DOI: 10.1083/jcb.99.5.1669. View

Villar-Garea A, Imhof A . The analysis of histone modifications. Biochim Biophys Acta. 2006; 1764(12):1932-9. DOI: 10.1016/j.bbapap.2006.08.009. View

Musil D, Zucic D, Turk D, Engh R, Mayr I, Huber R . The refined 2.15 A X-ray crystal structure of human liver cathepsin B: the structural basis for its specificity. EMBO J. 1991; 10(9):2321-30. PMC: 452927. DOI: 10.1002/j.1460-2075.1991.tb07771.x. View

10.

Sheng Y, Pan B, Wei F, Wang Y, Gao S . Case Study of the Response of N-Methyladenine DNA Modification to Environmental Stressors in the Unicellular Eukaryote Tetrahymena thermophila. mSphere. 2021; 6(3):e0120820. PMC: 8265677. DOI: 10.1128/mSphere.01208-20. View

11.

Li Y, Chen X, Wu K, Pan J, Long H, Yan Y . Characterization of Simple Sequence Repeats (SSRs) in Ciliated Protists Inferred by Comparative Genomics. Microorganisms. 2020; 8(5). PMC: 7285179. DOI: 10.3390/microorganisms8050662. View

12.

Wu M, Allis C, Sweet M, Cook R, Thatcher T, Gorovsky M . Four distinct and unusual linker proteins in a mitotically dividing nucleus are derived from a 71-kilodalton polyprotein, lack p34cdc2 sites, and contain protein kinase A sites. Mol Cell Biol. 1994; 14(1):10-20. PMC: 358351. DOI: 10.1128/mcb.14.1.10-20.1994. View

13.

Chalker D, Meyer E, Mochizuki K . Epigenetics of ciliates. Cold Spring Harb Perspect Biol. 2013; 5(12):a017764. PMC: 3839606. DOI: 10.1101/cshperspect.a017764. View

14.

Santos-Rosa H, Kirmizis A, Nelson C, Bartke T, Saksouk N, Cote J . Histone H3 tail clipping regulates gene expression. Nat Struct Mol Biol. 2008; 16(1):17-22. PMC: 3350865. DOI: 10.1038/nsmb.1534. View

15.

Duncan E, Muratore-Schroeder T, Cook R, Garcia B, Shabanowitz J, Hunt D . Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell. 2008; 135(2):284-94. PMC: 2579750. DOI: 10.1016/j.cell.2008.09.055. View

16.

Qiao J, Xu J, Bo T, Wang W . Micronucleus-specific histone H1 is required for micronuclear chromosome integrity in Tetrahymena thermophila. PLoS One. 2017; 12(11):e0187475. PMC: 5667856. DOI: 10.1371/journal.pone.0187475. View

17.

Dhaenens M . Histone clipping: the punctuation in the histone code. EMBO Rep. 2021; 22(8):e53440. PMC: 8344887. DOI: 10.15252/embr.202153440. View

18.

Duan L, Cheng T, Wei F, Qiao Y, Wang C, Warren A . New contribution to epigenetic studies: Isolation of micronuclei with high purity and DNA integrity in the model ciliated protist, Tetrahymena thermophila. Eur J Protistol. 2021; 80:125804. DOI: 10.1016/j.ejop.2021.125804. View

19.

Lu S, Wang J, Chitsaz F, Derbyshire M, Geer R, Gonzales N . CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Res. 2019; 48(D1):D265-D268. PMC: 6943070. DOI: 10.1093/nar/gkz991. View

20.

Felsenfeld G . A brief history of epigenetics. Cold Spring Harb Perspect Biol. 2014; 6(1). PMC: 3941222. DOI: 10.1101/cshperspect.a018200. View