» Articles » PMID: 37075164

A Governance of Ion Selectivity Based on the Occupancy of the "beacon" in One- and Four-domain Calcium and Sodium Channels

Overview
Specialty Biochemistry
Date 2023 Apr 19
PMID 37075164
Authors
Affiliations
Soon will be listed here.
Abstract

One of nature's exceptions was discovered when a Cav3 T-type channel was observed to switch phenotype from a calcium channel into a sodium channel by neutralizing an aspartate residue in the high field strength (HFS) +1 position within the ion selectivity filter. The HFS+1 site is dubbed a "" for its location at the entryway just above the constricted, minimum radius of the HFS site's electronegative ring. A classification is proposed based on the occupancy of the HFS+1 which correlates with the calcium- or sodium-selectivity phenotype. If the is a glycine, or neutral, non-glycine residue, then the cation channel is calcium-selective or sodium-permeable, respectively (Class I). Occupancy of a aspartate are calcium-selective channels (Class II) or possessing a strong calcium block (Class III). A residue lacking in position of the sequence alignment for the are sodium channels (Class IV). The extent to which animal channels are sodium-selective is dictated in the occupancy of the HFS site with a lysine residue (Class III/IV). Governance involving the solves the quandary the HFS site as a basis for ion selectivity, where an electronegative ring of glutamates at the HFS site generates a sodium-selective channel in one-domain channels but generates a calcium-selective channel in four-domain channels. Discovery of a splice variant in an exceptional channel revealed nature's exploits, highlighting the "beacon" as a principal determinant for calcium and sodium selectivity, encompassing known ion channels composed of one and four domains, from bacteria to animals.

References
1.
Tanabe T, Takeshima H, Mikami A, Flockerzi V, Takahashi H, Kangawa K . Primary structure of the receptor for calcium channel blockers from skeletal muscle. Nature. 1987; 328(6128):313-8. DOI: 10.1038/328313a0. View

2.
Barros F, Pardo L, Dominguez P, Sierra L, de la Pena P . New Structures and Gating of Voltage-Dependent Potassium (Kv) Channels and Their Relatives: A Multi-Domain and Dynamic Question. Int J Mol Sci. 2019; 20(2). PMC: 6359393. DOI: 10.3390/ijms20020248. View

3.
Leung A, Imagawa T, Campbell K . Structural characterization of the 1,4-dihydropyridine receptor of the voltage-dependent Ca2+ channel from rabbit skeletal muscle. Evidence for two distinct high molecular weight subunits. J Biol Chem. 1987; 262(17):7943-6. View

4.
Pellegrini-Calace M, Maiwald T, Thornton J . PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure. PLoS Comput Biol. 2009; 5(7):e1000440. PMC: 2704872. DOI: 10.1371/journal.pcbi.1000440. View

5.
Shimomura T, Yonekawa Y, Nagura H, Tateyama M, Fujiyoshi Y, Irie K . A native prokaryotic voltage-dependent calcium channel with a novel selectivity filter sequence. Elife. 2020; 9. PMC: 7041947. DOI: 10.7554/eLife.52828. View