» Articles » PMID: 37047102

A Standardized Protocol for Assuring the Validity of Proteomics Results from Liquid Chromatography-High-Resolution Mass Spectrometry

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2023 Apr 13
PMID 37047102
Authors
Affiliations
Soon will be listed here.
Abstract

Significant advances in the technological development of mass spectrometry in the field of proteomics and the generation of extremely large amounts of data require a very critical approach to assure the validity of results. Commonly used procedures involved liquid chromatography followed by high-resolution mass spectrometry measurements. Proteomics analysis is used in many fields including the investigation of the metabolism of biologically active substances in organisms. Thus, there is a need to care about the validity of the obtained results. In this work, we proposed a standardized protocol for proteomic analysis using liquid chromatography-high-resolution mass spectrometry, which covers all of these analytical steps to ensure the validity of the results. For this purpose, we explored the requirements of the ISO/IEC 17025:2017 standard as a reference document for quality control in biochemistry research-based mass spectrometry.

Citing Articles

Comprehensive Evaluation of Advanced Imputation Methods for Proteomic Data Acquired via the Label-Free Approach.

Wryk G, Gawor A, Bulska E Int J Mol Sci. 2025; 25(24.

PMID: 39769253 PMC: 11728106. DOI: 10.3390/ijms252413491.


Structural Characterization and Electrochemical Studies of Selected Alkaloid N-Oxides.

Dushna O, Dubenska L, Gawor A, Karasinki J, Barabash O, Ostapiuk Y Molecules. 2024; 29(12).

PMID: 38930787 PMC: 11205554. DOI: 10.3390/molecules29122721.


Unveiling the power of proteomics in advancing tropical animal health and production.

Adnane M, de Almeida A, Chapwanya A Trop Anim Health Prod. 2024; 56(5):182.

PMID: 38825622 DOI: 10.1007/s11250-024-04037-4.

References
1.
Nagaraj N, Wisniewski J, Geiger T, Cox J, Kircher M, Kelso J . Deep proteome and transcriptome mapping of a human cancer cell line. Mol Syst Biol. 2011; 7:548. PMC: 3261714. DOI: 10.1038/msb.2011.81. View

2.
Bulska E, Gawor A, Konopka A, Wryk G, Czarkowska-Paczek B, Gajewski Z . Label-Free Mass Spectrometry-Based Quantitative Proteomics to Evaluate the Effects of the Calcium-Sensing Receptor Agonist Cinacalcet on Protein Expression in Rat Brains and Livers. Med Sci Monit. 2022; 28:e937338. PMC: 9375513. DOI: 10.12659/MSM.937338. View

3.
Kowalczyk K, Torres-Elguera J, Jarek A, Konopka A, Kwiatkowska D, Bulska E . In vitro metabolic studies of novel selective androgen receptor modulators and their use for doping control analysis. Drug Test Anal. 2021; 14(1):122-136. DOI: 10.1002/dta.3151. View

4.
Rao P, Reddy A, Lu X, Dasari S, Krishnaprasad A, Biggs E . Proteomic identification of salivary biomarkers of type-2 diabetes. J Proteome Res. 2009; 8(1):239-45. DOI: 10.1021/pr8003776. View

5.
Bicka M, Joachimiak E, Urbanska P, Osinka A, Konopka A, Bulska E . Cfap91-Dependent Stability of the RS2 and RS3 Base Proteins and Adjacent Inner Dynein Arms in Cilia. Cells. 2022; 11(24). PMC: 9776847. DOI: 10.3390/cells11244048. View