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Pediatric Crohn's Disease Diagnosis Aid Genomic Analysis and Machine Learning

Overview
Journal Front Pediatr
Specialty Pediatrics
Date 2023 Apr 10
PMID 37033178
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Abstract

Introduction: Determination of pediatric Crohn's disease (CD) remains a major diagnostic challenge. However, the rapidly emerging field of artificial intelligence has demonstrated promise in developing diagnostic models for intractable diseases.

Methods: We propose an artificial neural network model of 8 gene markers identified by 4 classification algorithms based on Gene Expression Omnibus database for diagnostic of pediatric CD.

Results: The model achieved over 85% accuracy and area under ROC curve value in both training set and testing set for diagnosing pediatric CD. Additionally, immune infiltration analysis was performed to address why these markers can be integrated to develop a diagnostic model.

Conclusion: This study supports further clinical facilitation of precise disease diagnosis by integrating genomics and machine learning algorithms in open-access database.

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References
1.
Therrien A, Chapuy L, Bsat M, Rubio M, Bernard G, Arslanian E . Recruitment of activated neutrophils correlates with disease severity in adult Crohn's disease. Clin Exp Immunol. 2018; 195(2):251-264. PMC: 6330654. DOI: 10.1111/cei.13226. View

2.
Kelly D, Kotliar M, Woo V, Jagannathan S, Whitt J, Moncivaiz J . Microbiota-sensitive epigenetic signature predicts inflammation in Crohn's disease. JCI Insight. 2018; 3(18). PMC: 6237229. DOI: 10.1172/jci.insight.122104. View

3.
Chaves-Moreira D, Morin P, Drapkin R . Unraveling the Mysteries of PAX8 in Reproductive Tract Cancers. Cancer Res. 2020; 81(4):806-810. PMC: 8026505. DOI: 10.1158/0008-5472.CAN-20-3173. View

4.
Haberman Y, Karns R, Dexheimer P, Schirmer M, Somekh J, Jurickova I . Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response. Nat Commun. 2019; 10(1):38. PMC: 6318335. DOI: 10.1038/s41467-018-07841-3. View

5.
von Stein P, Lofberg R, Kuznetsov N, Gielen A, Persson J, Sundberg R . Multigene analysis can discriminate between ulcerative colitis, Crohn's disease, and irritable bowel syndrome. Gastroenterology. 2008; 134(7):1869-81. DOI: 10.1053/j.gastro.2008.02.083. View