» Articles » PMID: 36996212

Analysis of Genetic Dominance in the UK Biobank

Overview
Journal Science
Specialty Science
Date 2023 Mar 30
PMID 36996212
Authors
Affiliations
Soon will be listed here.
Abstract

Classical statistical genetics theory defines dominance as any deviation from a purely additive, or dosage, effect of a genotype on a trait, which is known as the dominance deviation. Dominance is well documented in plant and animal breeding. Outside of rare monogenic traits, however, evidence in humans is limited. We systematically examined common genetic variation across 1060 traits in a large population cohort (UK Biobank, = 361,194 samples analyzed) for evidence of dominance effects. We then developed a computationally efficient method to rapidly assess the aggregate contribution of dominance deviations to heritability. Lastly, observing that dominance associations are inherently less correlated between sites at a genomic locus than their additive counterparts, we explored whether they may be leveraged to identify causal variants more confidently.

Citing Articles

The 330 risk loci known for systemic lupus erythematosus (SLE): a review.

Laurynenka V, Harley J Front Lupus. 2024; 2.

PMID: 39624492 PMC: 11609870. DOI: 10.3389/flupu.2024.1398035.


PAGER: A novel genotype encoding strategy for modeling deviations from additivity in complex trait association studies.

Freda P, Ghosh A, Bhandary P, Matsumoto N, Chitre A, Zhou J BioData Min. 2024; 17(1):41.

PMID: 39394173 PMC: 11468469. DOI: 10.1186/s13040-024-00393-x.


Genome-wide discovery for biomarkers using quantile regression at biobank scale.

Wang C, Wang T, Kiryluk K, Wei Y, Aschard H, Ionita-Laza I Nat Commun. 2024; 15(1):6460.

PMID: 39085219 PMC: 11291931. DOI: 10.1038/s41467-024-50726-x.


Nonadditive Effects of Common Genetic Variants Have a Negligent Contribution to Cancer Heritability.

Hammermeister Suger A, Harrison T, Henning B, Turman C, Kraft P, Lindstrom S Cancer Epidemiol Biomarkers Prev. 2024; 33(10):1383-1388.

PMID: 39018351 PMC: 11446654. DOI: 10.1158/1055-9965.EPI-24-0496.


Exposure to Air Pollution, Genetic Susceptibility, and Psoriasis Risk in the UK.

Wu J, Ma Y, Yang J, Tian Y JAMA Netw Open. 2024; 7(7):e2421665.

PMID: 39012635 PMC: 11252902. DOI: 10.1001/jamanetworkopen.2024.21665.


References
1.
Millard L, Davies N, Gaunt T, Davey Smith G, Tilling K . Software Application Profile: PHESANT: a tool for performing automated phenome scans in UK Biobank. Int J Epidemiol. 2017; 47(1):29-35. PMC: 5837456. DOI: 10.1093/ije/dyx204. View

2.
Rees J . The genetics of sun sensitivity in humans. Am J Hum Genet. 2004; 75(5):739-51. PMC: 1182105. DOI: 10.1086/425285. View

3.
Monir M, Zhu J . Dominance and Epistasis Interactions Revealed as Important Variants for Leaf Traits of Maize NAM Population. Front Plant Sci. 2018; 9:627. PMC: 6015889. DOI: 10.3389/fpls.2018.00627. View

4.
Loos R . 15 years of genome-wide association studies and no signs of slowing down. Nat Commun. 2020; 11(1):5900. PMC: 7677394. DOI: 10.1038/s41467-020-19653-5. View

5.
Bycroft C, Freeman C, Petkova D, Band G, Elliott L, Sharp K . The UK Biobank resource with deep phenotyping and genomic data. Nature. 2018; 562(7726):203-209. PMC: 6786975. DOI: 10.1038/s41586-018-0579-z. View