Editorial: Harnessing Genebanks: High-throughput Phenotyping and Genotyping of Crop Wild Relatives and Landraces

Overview

Journal Front Plant Sci

Date 2023 Mar 27

PMID 36968416

Authors

Andres J Cortes

Jinyoung Y Barnaby

Affiliations

Soon will be listed here.

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References

Alves F, Balmant K, Resende Jr M, Kirst M, de Los Campos G . Accelerating forest tree breeding by integrating genomic selection and greenhouse phenotyping. Plant Genome. 2020; 13(3):e20048. DOI: 10.1002/tpg2.20048. View

Crossa J, Fritsche-Neto R, Montesinos-Lopez O, Costa-Neto G, Dreisigacker S, Montesinos-Lopez A . The Modern Plant Breeding Triangle: Optimizing the Use of Genomics, Phenomics, and Enviromics Data. Front Plant Sci. 2021; 12:651480. PMC: 8085545. DOI: 10.3389/fpls.2021.651480. View

Martignago D, Rico-Medina A, Blasco-Escamez D, Fontanet-Manzaneque J, Cano-Delgado A . Drought Resistance by Engineering Plant Tissue-Specific Responses. Front Plant Sci. 2020; 10:1676. PMC: 6987726. DOI: 10.3389/fpls.2019.01676. View

Lemmon Z, Reem N, Dalrymple J, Soyk S, Swartwood K, Rodriguez-Leal D . Rapid improvement of domestication traits in an orphan crop by genome editing. Nat Plants. 2018; 4(10):766-770. DOI: 10.1038/s41477-018-0259-x. View

Cortes A, Cornille A, Yockteng R . Evolutionary Genetics of Crop-Wild Complexes. Genes (Basel). 2022; 13(1). PMC: 8774885. DOI: 10.3390/genes13010001. View

Fernandez-Paz J, Cortes A, Hernandez-Varela C, Mejia-de-Tafur M, Rodriguez-Medina C, Baligar V . Rootstock-Mediated Genetic Variance in Cadmium Uptake by Juvenile Cacao ( L.) Genotypes, and Its Effect on Growth and Physiology. Front Plant Sci. 2022; 12:777842. PMC: 8733334. DOI: 10.3389/fpls.2021.777842. View

Waldvogel A, Feldmeyer B, Rolshausen G, Exposito-Alonso M, Rellstab C, Kofler R . Evolutionary genomics can improve prediction of species' responses to climate change. Evol Lett. 2020; 4(1):4-18. PMC: 7006467. DOI: 10.1002/evl3.154. View

Kumar S, Hilario E, Deng C, Molloy C . Turbocharging introgression breeding of perennial fruit crops: a case study on apple. Hortic Res. 2020; 7:47. PMC: 7109137. DOI: 10.1038/s41438-020-0270-z. View

Guevara-Escudero M, Osorio A, Cortes A . Integrative Pre-Breeding for Biotic Resistance in Forest Trees. Plants (Basel). 2021; 10(10). PMC: 8541610. DOI: 10.3390/plants10102022. View

10.

Barnaby J, Huggins T, Lee H, McClung A, Pinson S, Oh M . Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical grain properties in rice. Sci Rep. 2020; 10(1):9284. PMC: 7283329. DOI: 10.1038/s41598-020-65999-7. View

11.

Barrett R, Hoekstra H . Molecular spandrels: tests of adaptation at the genetic level. Nat Rev Genet. 2011; 12(11):767-80. DOI: 10.1038/nrg3015. View

12.

Tong H, Nikoloski Z . Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data. J Plant Physiol. 2021; 257:153354. DOI: 10.1016/j.jplph.2020.153354. View

13.

Buitrago-Bitar M, Cortes A, Lopez-Hernandez F, Londono-Caicedo J, Munoz-Florez J, Munoz L . Allelic Diversity at Abiotic Stress Responsive Genes in Relationship to Ecological Drought Indices for Cultivated Tepary Bean, A. Gray, and Its Wild Relatives. Genes (Basel). 2021; 12(4). PMC: 8070098. DOI: 10.3390/genes12040556. View

14.

Thapa R, Edwards M, Blair M . Relationship of Cultivated Grain Amaranth Species and Wild Relative Accessions. Genes (Basel). 2021; 12(12). PMC: 8702087. DOI: 10.3390/genes12121849. View

15.

Wu X, Cortes A, Blair M . Genetic differentiation of grain, fodder and pod vegetable type cowpeas (Vigna unguiculata L.) identified through single nucleotide polymorphisms from genotyping-by-sequencing. Mol Hortic. 2023; 2(1):8. PMC: 10514946. DOI: 10.1186/s43897-022-00028-x. View

16.

Lopez-Hernandez F, Cortes A . Last-Generation Genome-Environment Associations Reveal the Genetic Basis of Heat Tolerance in Common Bean ( L.). Front Genet. 2019; 10:954. PMC: 6883007. DOI: 10.3389/fgene.2019.00954. View

17.

Scherer L, Svenning J, Huang J, Seymour C, Sandel B, Mueller N . Global priorities of environmental issues to combat food insecurity and biodiversity loss. Sci Total Environ. 2020; 730:139096. DOI: 10.1016/j.scitotenv.2020.139096. View

18.

Barghi N, Hermisson J, Schlotterer C . Polygenic adaptation: a unifying framework to understand positive selection. Nat Rev Genet. 2020; 21(12):769-781. DOI: 10.1038/s41576-020-0250-z. View

19.

Cornille A, Giraud T, Smulders M, Roldan-Ruiz I, Gladieux P . The domestication and evolutionary ecology of apples. Trends Genet. 2013; 30(2):57-65. DOI: 10.1016/j.tig.2013.10.002. View

20.

Cortes A, This D, Chavarro C, Madrinan S, Blair M . Nucleotide diversity patterns at the drought-related DREB2 encoding genes in wild and cultivated common bean (Phaseolus vulgaris L.). Theor Appl Genet. 2012; 125(5):1069-85. DOI: 10.1007/s00122-012-1896-5. View