Editorial: Biology, Systematics, and Evolution of Ferns and Lycophytes in the Omics Era

Overview

Journal Front Plant Sci

Date 2023 Mar 13

PMID 36909387

Authors

Alexandre Salino

Germinal Rouhan

Li-Yaung Kuo

Thais Elias Almeida

Affiliations

Soon will be listed here.

References

Leveille-Bourret E, Starr J, Ford B, Moriarty Lemmon E, Lemmon A . Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics. Syst Biol. 2017; 67(1):94-112. DOI: 10.1093/sysbio/syx050. View

Schneider H, Schuettpelz E, Pryer K, Cranfill R, Magallon S, Lupia R . Ferns diversified in the shadow of angiosperms. Nature. 2004; 428(6982):553-7. DOI: 10.1038/nature02361. View

Li F, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux P . Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nat Plants. 2018; 4(7):460-472. PMC: 6786969. DOI: 10.1038/s41477-018-0188-8. View

Shen H, Jin D, Shu J, Zhou X, Lei M, Wei R . Large-scale phylogenomic analysis resolves a backbone phylogeny in ferns. Gigascience. 2017; 7(2):1-11. PMC: 5795342. DOI: 10.1093/gigascience/gix116. View

Testo W, Sundue M . A 4000-species dataset provides new insight into the evolution of ferns. Mol Phylogenet Evol. 2016; 105:200-211. DOI: 10.1016/j.ympev.2016.09.003. View

Rahmatpour N, Kuo L, Kang J, Herman E, Lei L, Li M . Analyses of Marsilea vestita genome and transcriptomes do not support widespread intron retention during spermatogenesis. New Phytol. 2022; 237(5):1490-1494. DOI: 10.1111/nph.18652. View

Goncalves D, Simpson B, Ortiz E, Shimizu G, Jansen R . Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes. Mol Phylogenet Evol. 2019; 138:219-232. DOI: 10.1016/j.ympev.2019.05.022. View

Huang X, Wang W, Gong T, Wickell D, Kuo L, Zhang X . The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence. Nat Plants. 2022; 8(5):500-512. PMC: 9122828. DOI: 10.1038/s41477-022-01146-6. View

Raubeson L, Jansen R . Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants. Science. 1992; 255(5052):1697-9. DOI: 10.1126/science.255.5052.1697. View

10.

Pryer K, Schneider H, Smith A, Cranfill R, Wolf P, Hunt J . Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature. 2001; 409(6820):618-22. DOI: 10.1038/35054555. View

11.

Fang Y, Qin X, Liao Q, Du R, Luo X, Zhou Q . The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences. Nat Plants. 2022; 8(9):1024-1037. PMC: 7613604. DOI: 10.1038/s41477-022-01222-x. View

12.

Marchant D, Chen G, Cai S, Chen F, Schafran P, Jenkins J . Dynamic genome evolution in a model fern. Nat Plants. 2022; 8(9):1038-1051. PMC: 9477723. DOI: 10.1038/s41477-022-01226-7. View

13.

Qi X, Kuo L, Guo C, Li H, Li Z, Qi J . A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families. Mol Phylogenet Evol. 2018; 127:961-977. DOI: 10.1016/j.ympev.2018.06.043. View

14.

Hollingsworth P, Li D, van der Bank M, Twyford A . Telling plant species apart with DNA: from barcodes to genomes. Philos Trans R Soc Lond B Biol Sci. 2016; 371(1702). PMC: 4971190. DOI: 10.1098/rstb.2015.0338. View

15.

Lehtonen S . Towards resolving the complete fern tree of life. PLoS One. 2011; 6(10):e24851. PMC: 3192703. DOI: 10.1371/journal.pone.0024851. View