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The Complete Plastome of Subsp. (Samp.) D.C.Thomas (Boraginaceae), the First Chloroplast Genome Belonging to the Genus

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Date 2023 Feb 23
PMID 36816053
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Abstract

(Loisel.) D.C.Thomas (Thomas et al., 2008), besides being a common plant of western and south-western Europe and north-western Africa, is a species with a wealth of reported uses in traditional and folk medicine. The chloroplast genome of subsp. (Samp.) D.C.Thomas (Thomas et al., 2008) isolate BPTPS049 described in this study is the first publicly available complete plastome belonging to the genus. The chloroplast genome (GenBank accession number: ON641304) is 150,041 bp in length with 37.5% GC content, displaying a quadripartite structure that contains a pair of inverted repeat regions (25,833 bp each), separated by a large (81,222 bp) and small (17,153 bp) single-copy regions. It has 131 annotated genes including 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The phylogenetic analysis performed confirms that subsp. is placed under the Boraginaceae family, which belongs to the Boraginales order. This study will contribute to conservation, phylogenetic, and evolutionary studies that comprise this traditional species relevant to the landscape of aromatic, medicinal, and condiment plants from Portugal.

References
1.
Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones E, Fischer A, Bock R . GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 2017; 45(W1):W6-W11. PMC: 5570176. DOI: 10.1093/nar/gkx391. View

2.
Xu X, Cheng Y, Tong L, Tian L, Xia C . The complete chloroplast genome sequence of Hance (Ehretiaceae). Mitochondrial DNA B Resour. 2022; 7(4):661-662. PMC: 9037173. DOI: 10.1080/23802359.2022.2061873. View

3.
Greiner S, Lehwark P, Bock R . OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 2019; 47(W1):W59-W64. PMC: 6602502. DOI: 10.1093/nar/gkz238. View

4.
Minh B, Schmidt H, Chernomor O, Schrempf D, Woodhams M, von Haeseler A . IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol. 2020; 37(5):1530-1534. PMC: 7182206. DOI: 10.1093/molbev/msaa015. View

5.
Ferrero V, Arroyo J, Castro S, Navarro L . Unusual heterostyly: style dimorphism and self-incompatibility are not tightly associated in Lithodora and Glandora (Boraginaceae). Ann Bot. 2011; 109(3):655-65. PMC: 3278292. DOI: 10.1093/aob/mcr222. View