» Articles » PMID: 36764042

Everything is Connected: Graph Neural Networks

Overview
Date 2023 Feb 10
PMID 36764042
Authors
Affiliations
Soon will be listed here.
Abstract

In many ways, graphs are the main modality of data we receive from nature. This is due to the fact that most of the patterns we see, both in natural and artificial systems, are elegantly representable using the language of graph structures. Prominent examples include molecules (represented as graphs of atoms and bonds), social networks and transportation networks. This potential has already been seen by key scientific and industrial groups, with already-impacted application areas including traffic forecasting, drug discovery, social network analysis and recommender systems. Further, some of the most successful domains of application for machine learning in previous years-images, text and speech processing-can be seen as special cases of graph representation learning, and consequently there has been significant exchange of information between these areas. The main aim of this short survey is to enable the reader to assimilate the key concepts in the area, and position graph representation learning in a proper context with related fields.

Citing Articles

PROPERMAB: an integrative framework for prediction of antibody developability using machine learning.

Li B, Luo S, Wang W, Xu J, Liu D, Shameem M MAbs. 2025; 17(1):2474521.

PMID: 40042626 PMC: 11901398. DOI: 10.1080/19420862.2025.2474521.


Dual-Targeted adversarial example in evasion attack on graph neural networks.

Kwon H, Kim D Sci Rep. 2025; 15(1):3912.

PMID: 39890835 PMC: 11785780. DOI: 10.1038/s41598-025-85493-2.


A multiscale molecular structural neural network for molecular property prediction.

Shi Z, Ma M, Ning H, Yang B, Dang J Mol Divers. 2025; .

PMID: 39862352 DOI: 10.1007/s11030-024-11100-7.


Optimizing multi label student performance prediction with GNN-TINet: A contextual multidimensional deep learning framework.

Zhang X, Zhang Y, Chen A, Yu M, Zhang L PLoS One. 2025; 20(1):e0314823.

PMID: 39841673 PMC: 11753673. DOI: 10.1371/journal.pone.0314823.


Annotating protein functions via fusing multiple biological modalities.

Ma W, Bi X, Jiang H, Wei Z, Zhang S Commun Biol. 2024; 7(1):1705.

PMID: 39730886 PMC: 11681170. DOI: 10.1038/s42003-024-07411-y.