» Articles » PMID: 36685253

Photoreactive Bioorthogonal Lipid Probes and Their Applications in Mammalian Biology

Overview
Journal RSC Chem Biol
Specialty Biology
Date 2023 Jan 23
PMID 36685253
Authors
Affiliations
Soon will be listed here.
Abstract

Lipids are an important class of biological molecules that possess many critical physiological functions, which enable the optimal survival of all organisms, including humans. While the role of lipids in the formation of biological cellular membranes and as a source of energy is fairly well understood, the cellular signalling pathways that lipids modulate in mammals are, in comparison, poorly characterized mechanistically and/or largely unknown. In an effort to dissect these mammalian cellular pathways regulated by signalling lipids and map hitherto unknown protein-lipid interactions, the last two decades have seen tremendous progress in the development of multifunctional lipid probes that, in conjunction with well-established bioorthogonal chemistries and chemoproteomics platforms, has almost exponentially expanded our knowledge in this field. In this review, we focus on the various photoreactive bioorthogonal lipid probes described in the literature, and briefly summarize the different photo-crosslinking groups and bioorthogonal chemistries used by them. Furthermore, we report specific case examples of such photoreactive bioorthogonal lipid probes, and discuss the new biological pathways and insights that have emerged from their use through chemoproteomics in mammalian cells. Finally, we highlight the challenges associated with the use of lipid probes in biological systems, and highlight their importance in the discovery and mechanistic understanding of lipid signalling pathways in the years to come.

Citing Articles

Exploring lipid-protein interactions in plant membranes.

Skrabalkova E, Pejchar P, Potocky M J Exp Bot. 2024; 75(17):5251-5266.

PMID: 38708855 PMC: 11389841. DOI: 10.1093/jxb/erae199.


Bioorthogonal Reactions in Bioimaging.

Kozma E, Kele P Top Curr Chem (Cham). 2024; 382(1):7.

PMID: 38400853 PMC: 10894152. DOI: 10.1007/s41061-024-00452-1.

References
1.
Laughlin S, Baskin J, Amacher S, Bertozzi C . In vivo imaging of membrane-associated glycans in developing zebrafish. Science. 2008; 320(5876):664-7. PMC: 2701225. DOI: 10.1126/science.1155106. View

2.
Niphakis M, Lum K, Cognetta 3rd A, Correia B, Ichu T, Olucha J . A Global Map of Lipid-Binding Proteins and Their Ligandability in Cells. Cell. 2015; 161(7):1668-80. PMC: 4615699. DOI: 10.1016/j.cell.2015.05.045. View

3.
Jiang X, Stockwell B, Conrad M . Ferroptosis: mechanisms, biology and role in disease. Nat Rev Mol Cell Biol. 2021; 22(4):266-282. PMC: 8142022. DOI: 10.1038/s41580-020-00324-8. View

4.
Yu W, Lin Z, Woo C, Baskin J . A Chemoproteomics Approach to Profile Phospholipase D-Derived Phosphatidyl Alcohol Interactions. ACS Chem Biol. 2021; 17(12):3276-3283. DOI: 10.1021/acschembio.1c00584. View

5.
Kiick K, Saxon E, Tirrell D, Bertozzi C . Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation. Proc Natl Acad Sci U S A. 2001; 99(1):19-24. PMC: 117506. DOI: 10.1073/pnas.012583299. View