Complete Genome Sequences of Two Lytic Phages of Salmonella Enterica Isolated from Wastewater in Ecuador

Overview

Journal Microbiol Resour Announc

Publisher American Society for Microbiology

Specialty Microbiology

Date 2023 Jan 18

PMID 36651741

Authors

Manuela Parra

Rosa de Los Angeles Bayas-Rea

Teresa Guerrero

Stuart Torres

Giuseppe DAuria

Mariana Reyes-Prieto

Sonia Zapata

Affiliations

Soon will be listed here.

Abstract

Salmonella enterica is one of the most common causes of foodborne diseases. Bacteriophages provide an option to reduce the presence of Salmonella. Here, we describe the isolation of two lytic Salmonella bacteriophages. The complete genomes were annotated and show similarity to that of the lytic phage NBSal001, in the family.

References

Overbeek R, Olson R, Pusch G, Olsen G, Davis J, Disz T . The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 2013; 42(Database issue):D206-14. PMC: 3965101. DOI: 10.1093/nar/gkt1226. View

Brettin T, Davis J, Disz T, Edwards R, Gerdes S, Olsen G . RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep. 2015; 5:8365. PMC: 4322359. DOI: 10.1038/srep08365. View

Llanos C, Ortega J, Bardales J . Complete Genome Sequences of Five Salmonella enterica Phages, NBSal001, NBSal002, NBSal003, NBSal004, and NBSal005. Microbiol Resour Announc. 2020; 9(22). PMC: 7256254. DOI: 10.1128/MRA.00301-20. View

Chen S, Zhou Y, Chen Y, Gu J . fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018; 34(17):i884-i890. PMC: 6129281. DOI: 10.1093/bioinformatics/bty560. View

Wang W, Schalamun M, Morales-Suarez A, Kainer D, Schwessinger B, Lanfear R . Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case. BMC Genomics. 2018; 19(1):977. PMC: 6311037. DOI: 10.1186/s12864-018-5348-8. View

Shen A, Millard A . Phage Genome Annotation: Where to Begin and End. Phage (New Rochelle). 2022; 2(4):183-193. PMC: 9041514. DOI: 10.1089/phage.2021.0015. View

Aziz R, Bartels D, Best A, DeJongh M, Disz T, Edwards R . The RAST Server: rapid annotations using subsystems technology. BMC Genomics. 2008; 9:75. PMC: 2265698. DOI: 10.1186/1471-2164-9-75. View

Ewels P, Magnusson M, Lundin S, Kaller M . MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics. 2016; 32(19):3047-8. PMC: 5039924. DOI: 10.1093/bioinformatics/btw354. View

Sathiamoorthy S, Malott R, Gisonni-Lex L, Ng S . Selection and evaluation of an efficient method for the recovery of viral nucleic acids from complex biologicals [corrected]. NPJ Vaccines. 2018; 3:31. PMC: 6086827. DOI: 10.1038/s41541-018-0067-3. View

10.

Tamames J, Puente-Sanchez F . SqueezeMeta, A Highly Portable, Fully Automatic Metagenomic Analysis Pipeline. Front Microbiol. 2019; 9:3349. PMC: 6353838. DOI: 10.3389/fmicb.2018.03349. View

11.

Altschul S, Gish W, Miller W, Myers E, Lipman D . Basic local alignment search tool. J Mol Biol. 1990; 215(3):403-10. DOI: 10.1016/S0022-2836(05)80360-2. View