Schwendinger S, Jaschke W, Walder T, Hench J, Vogi V, Frank S
Diagnostics (Basel). 2025; 15(5).
PMID: 40075779
PMC: 11899029.
DOI: 10.3390/diagnostics15050531.
Yang Q, Sun J, Wang X, Wang J, Liu Q, Ru J
Nat Commun. 2025; 16(1):2406.
PMID: 40069188
PMC: 11897243.
DOI: 10.1038/s41467-025-57756-z.
Kim I, Kim Jr I, Fola A, Puig E, Maina T, Hui S
medRxiv. 2025; .
PMID: 40061313
PMC: 11888525.
DOI: 10.1101/2025.02.21.25322471.
Zhang E, Coombe L, Wong J, Warren R, Birol I
BMC Bioinformatics. 2025; 26(1):78.
PMID: 40055584
PMC: 11887200.
DOI: 10.1186/s12859-025-06091-7.
Dunker-Seidler F, Breunig K, Haubner M, Sonntag F, Horer M, Feiner R
Mol Ther Methods Clin Dev. 2025; 33(1):101417.
PMID: 40008087
PMC: 11850753.
DOI: 10.1016/j.omtm.2025.101417.
A rapid and efficient zirconia bead-mediated ultrasonic strategy for DNA fragmentation up to 10 kbp.
Fu P, Zhao T, Wei P, Kong T, Qian S, Wang Y
RSC Adv. 2025; 15(8):6068-6075.
PMID: 39995453
PMC: 11848711.
DOI: 10.1039/d5ra00027k.
Estimating Gene Conversion Tract Length and Rate From PacBio HiFi Data.
Charmouh A, Porsborg P, Hansen L, Besenbacher S, Boeg Winge S, Almstrup K
Mol Biol Evol. 2025; 42(2).
PMID: 39982809
PMC: 11844249.
DOI: 10.1093/molbev/msaf019.
NAVIP: Unraveling the influence of neighboring small sequence variants on functional impact prediction.
Baasner J, Rempel A, Howard D, Pucker B
PLoS Comput Biol. 2025; 21(2):e1012732.
PMID: 39964984
PMC: 11849982.
DOI: 10.1371/journal.pcbi.1012732.
zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters.
Salamzade R, Tran P, Martin C, Manson A, Gilmore M, Earl A
Nucleic Acids Res. 2025; 53(3).
PMID: 39907107
PMC: 11795205.
DOI: 10.1093/nar/gkaf045.
High-fidelity annotated triploid genome of the quarantine root-knot nematode, Meloidogyne enterolobii.
Poullet M, Konigopal H, Rancurel C, Sallaberry M, Lopez-Roques C, Mota A
Sci Data. 2025; 12(1):184.
PMID: 39885189
PMC: 11782629.
DOI: 10.1038/s41597-025-04434-w.
Temporal transcriptional profiling of host cells infected by a veterinary alphaherpesvirus using nanopore sequencing.
Tombacz D, Maroti Z, Olah P, Dormo A, Gulyas G, Kalmar T
Sci Rep. 2025; 15(1):3247.
PMID: 39863683
PMC: 11762278.
DOI: 10.1038/s41598-025-87536-0.
Profiling the epigenome using long-read sequencing.
Liu T, Conesa A
Nat Genet. 2025; 57(1):27-41.
PMID: 39779955
DOI: 10.1038/s41588-024-02038-5.
Combining DNA and protein alignments to improve genome annotation with LiftOn.
Chao K, Heinz J, Hoh C, Mao A, Shumate A, Pertea M
Genome Res. 2024; 35(2):311-325.
PMID: 39730188
PMC: 11874971.
DOI: 10.1101/gr.279620.124.
Microbial functional diversity and redundancy: moving forward.
Ramond P, Galand P, Logares R
FEMS Microbiol Rev. 2024; 49.
PMID: 39689915
PMC: 11756291.
DOI: 10.1093/femsre/fuae031.
Navigating triplet repeats sequencing: concepts, methodological challenges and perspective for Huntington's disease.
Maestri S, Scalzo D, Damaggio G, Zobel M, Besusso D, Cattaneo E
Nucleic Acids Res. 2024; 53(1.
PMID: 39676657
PMC: 11724279.
DOI: 10.1093/nar/gkae1155.
Characterization of radiations-induced genomic structural variations in Arabidopsis thaliana.
Sall S, Alioua A, Staerck S, Graindorge S, Pellicioli M, Schuler J
Plant J. 2024; 121(1):e17180.
PMID: 39616610
PMC: 11712536.
DOI: 10.1111/tpj.17180.
Advancements in Multiple Myeloma Research: High-Throughput Sequencing Technologies, Omics, and the Role of Artificial Intelligence.
Gutierrez-Gonzalez A, Del Hierro I, Cariaga-Martinez A
Biology (Basel). 2024; 13(11).
PMID: 39596878
PMC: 11592186.
DOI: 10.3390/biology13110923.
Considering Biomarkers of Neurodegeneration in Alzheimer's Disease: The Potential of Circulating Cell-Free DNA in Precision Neurology.
Pollard C, Saito E, Burns J, Hill J, Jenkins T
J Pers Med. 2024; 14(11).
PMID: 39590596
PMC: 11595805.
DOI: 10.3390/jpm14111104.
The recombination landscape of the barn owl, from families to populations.
Topaloudis A, Cumer T, Lavanchy E, Ducrest A, Simon C, Machado A
Genetics. 2024; 229(1):1-50.
PMID: 39545468
PMC: 11708917.
DOI: 10.1093/genetics/iyae190.
Matching excellence: Oxford Nanopore Technologies' rise to parity with Pacific Biosciences in genome reconstruction of non-model bacterium with high G+C content.
Soto-Serrano A, Li W, Panah F, Hui Y, Atienza P, Fomenkov A
Microb Genom. 2024; 10(11).
PMID: 39526732
PMC: 11649196.
DOI: 10.1099/mgen.0.001316.