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π-Stacking Isomerism in Polycyclic Aromatic Hydrocarbons: The 2-Naphthalenethiol Dimer

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Specialty Chemistry
Date 2022 Dec 30
PMID 36583611
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Abstract

π-Stacking is a common descriptor for face-to-face attractive forces between aromatic hydrocarbons. However, the physical origin of this interaction remains debatable. Here we examined π-stacking in a model homodimer formed by two thiol-substituted naphthalene rings. Two isomers of the 2-naphthalenethiol dimer were discovered using rotational spectroscopy, sharing a parallel-displaced crossed orientation and absence of thiol-thiol hydrogen bonds. One of the isomers presents symmetry, structurally analogous to the global minimum of the naphthalene dimer. The experimental data were rationalized with molecular orbital calculations, revealing a shallow potential energy surface. Noncovalent interactions are dominated by dispersion forces according to SAPT energy decomposition. In addition, the reduced electronic density shows a diffuse and extended region of inter-ring interactions, compatible with the description of π-stacking as a competition between dispersion and Pauli repulsion forces.

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References
1.
Hohenstein E, Duan J, Sherrill C . Origin of the surprising enhancement of electrostatic energies by electron-donating substituents in substituted sandwich benzene dimers. J Am Chem Soc. 2011; 133(34):13244-7. DOI: 10.1021/ja204294q. View

2.
Seifert N, Steber A, Neill J, Perez C, Zaleski D, Pate B . The interplay of hydrogen bonding and dispersion in phenol dimer and trimer: structures from broadband rotational spectroscopy. Phys Chem Chem Phys. 2013; 15(27):11468-77. DOI: 10.1039/c3cp51725j. View

3.
Contreras-Garcia J, Johnson E, Keinan S, Chaudret R, Piquemal J, Beratan D . NCIPLOT: a program for plotting non-covalent interaction regions. J Chem Theory Comput. 2011; 7(3):625-632. PMC: 3080048. DOI: 10.1021/ct100641a. View

4.
Wheeler S . Local nature of substituent effects in stacking interactions. J Am Chem Soc. 2011; 133(26):10262-74. DOI: 10.1021/ja202932e. View

5.
Saragi R, Juanes M, Perez C, Pinacho P, Tikhonov D, Caminati W . Switching Hydrogen Bonding to π-Stacking: The Thiophenol Dimer and Trimer. J Phys Chem Lett. 2021; 12(5):1367-1373. PMC: 8812119. DOI: 10.1021/acs.jpclett.0c03797. View