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Analysis of the Type 4 Effectome Across the Genus

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2022 Dec 23
PMID 36555155
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Abstract

are obligate intracellular bacteria primarily carried by arthropod hosts. The genus contains several vertebrate pathogens vectored by hematophagous arthropods. Despite the potential for disease, our understanding of are limited by the difficulties associated with growing and manipulating obligate intracellular bacteria. To aid with this, our lab conducted an analysis of eight genomes and three plasmids from across the genus . Using OPT4e, a learning algorithm-based program designed to identify effector proteins secreted by the type 4 secretion system, we generated a putative effectome for the genus. We then consolidated effectors into homolog sets to identify effectors unique to with different life strategies or evolutionary histories. We also compared predicted effectors to non-effectors for differences in G+C content and gene splitting. Based on this analysis, we predicted 1571 effectors across the genus, resulting in 604 homolog sets. Each species had unique homolog sets, while 42 were present in all eight species analyzed. Effectors were flagged in association with pathogenic, tick and flea-borne . Predicted effectors also varied in G+C content and frequency of gene splitting as compared to non-effectors. Species effector repertoires show signs of expansion, degradation, and horizontal acquisition associated with lifestyle and lineage.

References
1.
Fournier P, El Karkouri K, Leroy Q, Robert C, Giumelli B, Renesto P . Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction. BMC Genomics. 2009; 10:166. PMC: 2694212. DOI: 10.1186/1471-2164-10-166. View

2.
Triplett L, Shidore T, Long J, Miao J, Wu S, Han Q . AvrRxo1 Is a Bifunctional Type III Secreted Effector and Toxin-Antitoxin System Component with Homologs in Diverse Environmental Contexts. PLoS One. 2016; 11(7):e0158856. PMC: 4938570. DOI: 10.1371/journal.pone.0158856. View

3.
Gillespie J, Williams K, Shukla M, Snyder E, Nordberg E, Ceraul S . Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life. PLoS One. 2009; 3(4):e2018. PMC: 2635572. DOI: 10.1371/journal.pone.0002018. View

4.
Gillespie J, Phan I, Driscoll T, Guillotte M, Lehman S, Rennoll-Bankert K . The Rickettsia type IV secretion system: unrealized complexity mired by gene family expansion. Pathog Dis. 2016; 74(6). PMC: 5505475. DOI: 10.1093/femspd/ftw058. View

5.
Ogata H, La Scola B, Audic S, Renesto P, Blanc G, Robert C . Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet. 2006; 2(5):e76. PMC: 1458961. DOI: 10.1371/journal.pgen.0020076. View