New Mitogenome Features of Philopotamidae (Insecta: Trichoptera) with Two New Species of

Overview

Journal Insects

Specialty Biology

Date 2022 Dec 23

PMID 36555011

Authors

Lang Peng

Xinyu Ge

Faxian Shi

Le Wang

Haoming Zang

Changhai Sun

Beixin Wang

Affiliations

Soon will be listed here.

Abstract

A total of 14 individuals of Philopotamidae, from China, were examined. Six species in four genera, including two new species of the genus , were recognized. Their barcode sequences were extracted, mitogenomes were sequenced, assembled and analyzed. All of these sequences were used to further reveal the phylogenetic relationships of the family Philopotamidae. In addition, two new species: n. sp., n. sp. were described and illustrated.

Citing Articles

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Liu W, Pei W, Tang Y, Nie J, Cao W, Wang C Insects. 2025; 16(2).

PMID: 40003808 PMC: 11856422. DOI: 10.3390/insects16020178.

Mitogenomics Provide New Phylogenetic Insights of the Family Apataniidae (Trichoptera: Integripalpia).

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References

Wang H, Minh B, Susko E, Roger A . Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation. Syst Biol. 2017; 67(2):216-235. DOI: 10.1093/sysbio/syx068. View

Ojala D, Montoya J, Attardi G . tRNA punctuation model of RNA processing in human mitochondria. Nature. 1981; 290(5806):470-4. DOI: 10.1038/290470a0. View

Zou H, Jakovlic I, Chen R, Zhang D, Zhang J, Li W . The complete mitochondrial genome of parasitic nematode Camallanus cotti: extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class. BMC Genomics. 2017; 18(1):840. PMC: 5669012. DOI: 10.1186/s12864-017-4237-x. View

Zhang G, Chain F, Abbott C, Cristescu M . Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities. Evol Appl. 2018; 11(10):1901-1914. PMC: 6231476. DOI: 10.1111/eva.12694. View

Lartillot N, Rodrigue N, Stubbs D, Richer J . PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Syst Biol. 2013; 62(4):611-5. DOI: 10.1093/sysbio/syt022. View

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S . Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012; 28(12):1647-9. PMC: 3371832. DOI: 10.1093/bioinformatics/bts199. View

Duchene A, Pujol C, Marechal-Drouard L . Import of tRNAs and aminoacyl-tRNA synthetases into mitochondria. Curr Genet. 2008; 55(1):1-18. DOI: 10.1007/s00294-008-0223-9. View

Shen W, Le S, Li Y, Hu F . SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation. PLoS One. 2016; 11(10):e0163962. PMC: 5051824. DOI: 10.1371/journal.pone.0163962. View

Minh B, Schmidt H, Chernomor O, Schrempf D, Woodhams M, von Haeseler A . IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol. 2020; 37(5):1530-1534. PMC: 7182206. DOI: 10.1093/molbev/msaa015. View

10.

Capella-Gutierrez S, Silla-Martinez J, Gabaldon T . trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009; 25(15):1972-3. PMC: 2712344. DOI: 10.1093/bioinformatics/btp348. View

11.

Wahlberg E, Johanson K . The age, ancestral distribution and radiation of Chimarra (Trichoptera: Philopotamidae) using molecular methods. Mol Phylogenet Evol. 2014; 79:433-42. DOI: 10.1016/j.ympev.2014.06.023. View

12.

Grant J, Stothard P . The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 2008; 36(Web Server issue):W181-4. PMC: 2447734. DOI: 10.1093/nar/gkn179. View

13.

Kalyaanamoorthy S, Minh B, Wong T, von Haeseler A, Jermiin L . ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 2017; 14(6):587-589. PMC: 5453245. DOI: 10.1038/nmeth.4285. View

14.

Zheng C, Liu Z, Zhao Y, Wang Y, Bu W, Wang X . First Report on Mitochondrial Gene Rearrangement in Non-Biting Midges, Revealing a Synapomorphy in Kieffer (Diptera: Chironomidae). Insects. 2022; 13(2). PMC: 8875173. DOI: 10.3390/insects13020115. View

15.

Rozas J, Ferrer-Mata A, Sanchez-DelBarrio J, Guirao-Rico S, Librado P, Ramos-Onsins S . DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets. Mol Biol Evol. 2017; 34(12):3299-3302. DOI: 10.1093/molbev/msx248. View

16.

Ge X, Peng L, Du J, Sun C, Wang B . New species of the genus Curtis, 1834 (Trichoptera, Molannidae) in China inferred from morphology and DNA barcodes. Zookeys. 2023; 1112:161-178. PMC: 9848726. DOI: 10.3897/zookeys.1112.84475. View

17.

Cameron S . Insect mitochondrial genomics: implications for evolution and phylogeny. Annu Rev Entomol. 2013; 59:95-117. DOI: 10.1146/annurev-ento-011613-162007. View

18.

Donath A, Juhling F, Al-Arab M, Bernhart S, Reinhardt F, Stadler P . Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Res. 2019; 47(20):10543-10552. PMC: 6847864. DOI: 10.1093/nar/gkz833. View

19.

Katoh K, Standley D . MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013; 30(4):772-80. PMC: 3603318. DOI: 10.1093/molbev/mst010. View

20.

Lin X, Liu Z, Yan L, Duan X, Bu W, Wang X . Mitogenomes provide new insights of evolutionary history of Boreheptagyiini and Diamesini (Diptera: Chironomidae: Diamesinae). Ecol Evol. 2022; 12(5):e8957. PMC: 9130564. DOI: 10.1002/ece3.8957. View