» Articles » PMID: 36532774

Detecting Potential Mechanism of Vitamin D in Treating Rheumatoid Arthritis Based on Network Pharmacology and Molecular Docking

Overview
Journal Front Pharmacol
Date 2022 Dec 19
PMID 36532774
Authors
Affiliations
Soon will be listed here.
Abstract

Vitamin D plays a vital role in Rheumatoid arthritis (RA). However, the mechanism of vitamin D and rheumatism is still unclear. Therefore, a strategy based on network pharmacology and molecular docking was used to explore the mechanism of vitamin D and RA. The targets of RA were obtained from the GeneCards database and Therapeutic Targets Database, and the targets of vitamin D were obtained from the Drugbank database and STITCH database. Next, overlapping genes were identified by Venny, and further Gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and molecular docking analyses were performed. A total of 1,139 targets of RA and 201 targets of vitamin D were obtained. A total of 76 overlapping genes were identified by Venny. The enrichment analysis showed that cell proliferation, immune response, and apoptotic process were the critical biological processes of vitamin D in treating RA. Antifolate resistance, osteoclast differentiation, and the nuclear factor-kappa B (NF-κB) signalling pathway are fundamental mechanisms of vitamin D in treating RA. According to further molecular docking, ALB, TNF, CASP3, and TP53 may be important punctuation points or diagnostic markers for future RA treatment. By analysing overlapping genes of diseases and drugs, this study confirmed that ALB, TNF, CASP3, and TP53 may be essential markers or diagnostic markers for future RA treatment.

Citing Articles

Systematic pharmacology-based strategy to investigate the mechanism of beta-sitosterol for the treatment of rheumarthritis.

Wang X, Mao J Front Genet. 2024; 15:1507606.

PMID: 39698463 PMC: 11652534. DOI: 10.3389/fgene.2024.1507606.


Putative mechanism of a multivitamin treatment against insulin resistance.

Palma-Jacinto J, Lopez-Lopez E, Medina-Franco J, Montero-Ruiz O, Santiago-Roque I Adipocyte. 2024; 13(1):2369777.

PMID: 38937879 PMC: 11216102. DOI: 10.1080/21623945.2024.2369777.

References
1.
Sahebari M, Ayati R, Mirzaei H, Sahebkar A, Hejazi S, Saghafi M . Serum Trace Element Concentrations in Rheumatoid Arthritis. Biol Trace Elem Res. 2015; 171(2):237-245. DOI: 10.1007/s12011-015-0501-6. View

2.
Szekanecz Z, McInnes I, Schett G, Szamosi S, Benko S, Szucs G . Autoinflammation and autoimmunity across rheumatic and musculoskeletal diseases. Nat Rev Rheumatol. 2021; 17(10):585-595. DOI: 10.1038/s41584-021-00652-9. View

3.
Pinzi L, Rastelli G . Molecular Docking: Shifting Paradigms in Drug Discovery. Int J Mol Sci. 2019; 20(18). PMC: 6769923. DOI: 10.3390/ijms20184331. View

4.
Dehkordi M, Munn R, Fearnhead H . Non-Canonical Roles of Apoptotic Caspases in the Nervous System. Front Cell Dev Biol. 2022; 10:840023. PMC: 8904960. DOI: 10.3389/fcell.2022.840023. View

5.
Wang Y, Hou L, Yuan X, Xu N, Zhao S, Yang L . miR-483-3p promotes cell proliferation and suppresses apoptosis in rheumatoid arthritis fibroblast-like synoviocytes by targeting IGF-1. Biomed Pharmacother. 2020; 130:110519. DOI: 10.1016/j.biopha.2020.110519. View