» Articles » PMID: 36350035

How Phosphorylation Impacts Intrinsically Disordered Proteins and Their Function

Overview
Journal Essays Biochem
Specialty Biochemistry
Date 2022 Nov 9
PMID 36350035
Authors
Affiliations
Soon will be listed here.
Abstract

Phosphorylation is the most common post-translational modification (PTM) in eukaryotes, occurring particularly frequently in intrinsically disordered proteins (IDPs). These proteins are highly flexible and dynamic by nature. Thus, it is intriguing that the addition of a single phosphoryl group to a disordered chain can impact its function so dramatically. Furthermore, as many IDPs carry multiple phosphorylation sites, the number of possible states increases, enabling larger complexities and novel mechanisms. Although a chemically simple and well-understood process, the impact of phosphorylation on the conformational ensemble and molecular function of IDPs, not to mention biological output, is highly complex and diverse. Since the discovery of the first phosphorylation site in proteins 75 years ago, we have come to a much better understanding of how this PTM works, but with the diversity of IDPs and their capacity for carrying multiple phosphoryl groups, the complexity grows. In this Essay, we highlight some of the basic effects of IDP phosphorylation, allowing it to serve as starting point when embarking on studies into this topic. We further describe how recent complex cases of multisite phosphorylation of IDPs have been instrumental in widening our view on the effect of protein phosphorylation. Finally, we put forward perspectives on the phosphorylation of IDPs, both in relation to disease and in context of other PTMs; areas where deep insight remains to be uncovered.

Citing Articles

Effects of Microplastic Accumulation on Neuronal Death After Global Cerebral Ischemia.

Kim D, Park M, Yang H, Woo S, Jung H, Son D Cells. 2025; 14(4).

PMID: 39996714 PMC: 11853503. DOI: 10.3390/cells14040241.


Characteristic Fragmentation Behavior of Linear and Cyclic -Linked Glycopeptides and Their Peptide Skeletons in MALDI-TOF/TOF MS.

Fukushi K, Urakami S, Hinou H Molecules. 2025; 30(3).

PMID: 39942815 PMC: 11821001. DOI: 10.3390/molecules30030711.


Virus-modified paraspeckle-like condensates are hubs for viral RNA processing and their formation drives genomic instability.

Harper K, Harrington E, Hayward C, Anene C, Wongwiwat W, White R Nat Commun. 2024; 15(1):10240.

PMID: 39592606 PMC: 11599752. DOI: 10.1038/s41467-024-54592-5.


Phosphorylation of disordered proteins tunes local and global intramolecular interactions.

Usher E, Fossat M, Holehouse A Biophys J. 2024; 123(23):4082-4096.

PMID: 39539017 PMC: 11628823. DOI: 10.1016/j.bpj.2024.10.021.


Phosphorylation in the Proteome: A Meta-Analysis of Publicly Available Data Sets.

Camacho O, Ramsbottom K, Prakash A, Sun Z, Riverol Y, Bowler-Barnett E J Proteome Res. 2024; 23(12):5326-5341.

PMID: 39475123 PMC: 11629380. DOI: 10.1021/acs.jproteome.4c00418.


References
1.
de Groot R, den Hertog J, Vandenheede J, Goris J, Sassone-Corsi P . Multiple and cooperative phosphorylation events regulate the CREM activator function. EMBO J. 1993; 12(10):3903-11. PMC: 413673. DOI: 10.1002/j.1460-2075.1993.tb06068.x. View

2.
Selenko P, Frueh D, Elsaesser S, Haas W, Gygi S, Wagner G . In situ observation of protein phosphorylation by high-resolution NMR spectroscopy. Nat Struct Mol Biol. 2008; 15(3):321-9. DOI: 10.1038/nsmb.1395. View

3.
Nobles K, Xiao K, Ahn S, Shukla A, Lam C, Rajagopal S . Distinct phosphorylation sites on the β(2)-adrenergic receptor establish a barcode that encodes differential functions of β-arrestin. Sci Signal. 2011; 4(185):ra51. PMC: 3415961. DOI: 10.1126/scisignal.2001707. View

4.
Philpott J, Narasimamurthy R, Ricci C, Freeberg A, Hunt S, Yee L . Casein kinase 1 dynamics underlie substrate selectivity and the PER2 circadian phosphoswitch. Elife. 2020; 9. PMC: 7012598. DOI: 10.7554/eLife.52343. View

5.
Eide E, Woolf M, Kang H, Woolf P, Hurst W, Camacho F . Control of mammalian circadian rhythm by CKIepsilon-regulated proteasome-mediated PER2 degradation. Mol Cell Biol. 2005; 25(7):2795-807. PMC: 1061645. DOI: 10.1128/MCB.25.7.2795-2807.2005. View