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Organic Matter Degradation and Bacterial Communities in Surface Sediment Influenced by

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Journal Front Microbiol
Specialty Microbiology
Date 2022 Nov 7
PMID 36338081
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Abstract

To alleviate excessive organic matter (OM) accumulation in sediments and reduce the risk of endogenous water pollution and eutrophication in aquaculture ponds, an 84-day experiment investigated the effect of the red swamp crayfish on the OM degradation and bacterial communities in sediments. The experiment established two groups, treatment and control (represented as PG and CG, respectively), with three replicates for each group. At the end of experiment, the total, light fraction, and heavy fraction organic matter concentrations in the sediment of the PG group were significantly lower than those of the CG group. Significantly higher oxidation-reduction potential (ORP) and more extensively degraded OM, indicated by fatty acids, were observed in the PG group. Compared to the CG group, the average OM removal efficiency induced by crayfish in the PG group was 15.24%. Using 16S ribosomal RNA (rRNA) high-throughput sequencing, we investigated the differences in benthic bacterial communities between the PG and CG groups. Linear discriminant analysis (LDA) effect size (LEfSe) analysis revealed that Nitrospirae, Nitrospira, Alphaproteobacteria, OLB14, Nitrospirales, Rhodobacterales, Rhizobiales, Micrococcales, Nitrospiraceae, Rhodobacteraceae, , and were significantly enriched in the PG group. Four significantly different functional groups related to OM degradation were determined between the PG and CG groups according to the functional annotation of procaryotic taxa (FAPROTAX) analysis. These four functional groups, aerobic chemoheterotrophy, manganese oxidation, dark iron oxidation, and dark sulfide oxidation, showed significantly higher relative abundances in the PG group. Overall, effectively increased the ORP values of sediments to provide favorable conditions for OM degradation and changed the composition and function of bacterial communities to improve bacterial abilities for OM decomposition, thereby promoting OM degradation in the sediment.

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References
1.
Zhang S, Fang Y, Luo Y, Li Y, Ge T, Wang Y . Linking soil carbon availability, microbial community composition and enzyme activities to organic carbon mineralization of a bamboo forest soil amended with pyrogenic and fresh organic matter. Sci Total Environ. 2021; 801:149717. DOI: 10.1016/j.scitotenv.2021.149717. View

2.
Costello C, Cao L, Gelcich S, Cisneros-Mata M, Free C, Froehlich H . The future of food from the sea. Nature. 2020; 588(7836):95-100. DOI: 10.1038/s41586-020-2616-y. View

3.
Magoc T, Salzberg S . FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011; 27(21):2957-63. PMC: 3198573. DOI: 10.1093/bioinformatics/btr507. View

4.
Louca S, Parfrey L, Doebeli M . Decoupling function and taxonomy in the global ocean microbiome. Science. 2016; 353(6305):1272-7. DOI: 10.1126/science.aaf4507. View

5.
Boer S, Hedtkamp S, van Beusekom J, Fuhrman J, Boetius A, Ramette A . Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. ISME J. 2009; 3(7):780-91. DOI: 10.1038/ismej.2009.29. View