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Morphologic Identification of Clinically Encountered Moulds Using a Residual Neural Network

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Journal Front Microbiol
Specialty Microbiology
Date 2022 Oct 31
PMID 36312928
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Abstract

The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our research achieved the rapid identification of nine common clinical moulds: complex, complex, complex, complex, , , , spp., and spp. In our study, the adaptive image contrast enhancement enabling XMVision Fungus AI as a promising module by effectively improve the identification performance. The overall identification accuracy of XMVision Fungus AI was up to 93.00% (279/300), which was higher than that of human readers. XMVision Fungus AI shows intrinsic advantages in the identification of clinical moulds and can be applied to improve human identification efficiency through training. Moreover, it has great potential for clinical application because of its convenient operation and lower cost. This system will be suitable for primary hospitals in China and developing countries.

References
1.
Ho C, Jean N, Hogan C, Blackmon L, Jeffrey S, Holodniy M . Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning. Nat Commun. 2019; 10(1):4927. PMC: 6960993. DOI: 10.1038/s41467-019-12898-9. View

2.
Ren S, He K, Girshick R, Sun J . Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks. IEEE Trans Pattern Anal Mach Intell. 2016; 39(6):1137-1149. DOI: 10.1109/TPAMI.2016.2577031. View

3.
Kaliamurthy J, Kalavathy C, Nelson Jesudasan C, Thomas P . Keratitis due to Chaetomium sp. Case Rep Ophthalmol Med. 2012; 2011:696145. PMC: 3350250. DOI: 10.1155/2011/696145. View

4.
Balajee S, Borman A, Brandt M, Cano J, Cuenca-Estrella M, Dannaoui E . Sequence-based identification of Aspergillus, fusarium, and mucorales species in the clinical mycology laboratory: where are we and where should we go from here?. J Clin Microbiol. 2008; 47(4):877-84. PMC: 2668331. DOI: 10.1128/JCM.01685-08. View

5.
McCoy D, DePestel D, Carver P . Primary antifungal prophylaxis in adult hematopoietic stem cell transplant recipients: current therapeutic concepts. Pharmacotherapy. 2009; 29(11):1306-25. DOI: 10.1592/phco.29.11.1306. View