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Signatures of Positive Selection in the Genome of : A Subspecies of European Honeybees

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Journal Life (Basel)
Specialty Biology
Date 2022 Oct 27
PMID 36295077
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Abstract

The technology of long reads substantially improved the contingency of the genome assembly, particularly resolving contiguity of the repetitive regions. By integrating the interactive fragment using Hi-C, and the HiFi technique, a solid genome of the honeybee was assembled at the chromosomal level. A distinctive pattern of genes involved in social evolution was found by comparing it with social and solitary bees. A positive selection was identified in genes involved with cold tolerance, which likely underlies the adaptation of this European honeybee subspecies in the north hemisphere. The availability of this new high-quality genome will foster further studies and advances on genome variation during subspeciation, honeybee breeding and comparative genomics.

References
1.
Mulder N, Apweiler R . The InterPro database and tools for protein domain analysis. Curr Protoc Bioinformatics. 2008; Chapter 2:Unit 2.7. DOI: 10.1002/0471250953.bi0207s21. View

2.
Page Jr R, Scheiner R, Erber J, Amdam G . 8. The development and evolution of division of labor and foraging specialization in a social insect (Apis mellifera L.). Curr Top Dev Biol. 2006; 74:253-86. PMC: 2606150. DOI: 10.1016/S0070-2153(06)74008-X. View

3.
Seppey M, Manni M, Zdobnov E . BUSCO: Assessing Genome Assembly and Annotation Completeness. Methods Mol Biol. 2019; 1962:227-245. DOI: 10.1007/978-1-4939-9173-0_14. View

4.
Fehringer G, Liu G, Briollais L, Brennan P, Amos C, Spitz M . Comparison of pathway analysis approaches using lung cancer GWAS data sets. PLoS One. 2012; 7(2):e31816. PMC: 3283683. DOI: 10.1371/journal.pone.0031816. View

5.
Walsh A, Triant D, Le Tourneau J, Shamimuzzaman M, Elsik C . Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses. Nucleic Acids Res. 2021; 50(D1):D1032-D1039. PMC: 8728238. DOI: 10.1093/nar/gkab1018. View