» Articles » PMID: 36292664

The Genetic Diversity and the Divergence Time in Extant Primitive Mayfly, Ulmer, 1920 Using the Mitochondrial Genome

Overview
Journal Genes (Basel)
Publisher MDPI
Date 2022 Oct 27
PMID 36292664
Authors
Affiliations
Soon will be listed here.
Abstract

In this study, the mitochondrial (mt) genomes of (Ephemeroptera: Siphluriscidae) were evaluated in specimens collected from two sites in China: Niutou Mountain, Zhejiang Province ( NTS) and Leigong Mountain, Guizhou Province ( LGS) and were successfully sequenced. The lengths of the mt genomes of NTS and LGS were 15,904 bp (ON729390) and 15,212 bp (ON729391), respectively. However, an in-depth comparison of the two mt genomes showed significant differences between the specimens collected from the two sites. A detailed analysis of the genetic distance between NTS and LGS was undertaken to further achieve an accurate delimitation of . The genetic distance between NTS and the other three species within Siphluriscidae was a high value, above 12.2%. The two mt genomes were used to reconstruct phylogenetic relationships and estimate divergence time. The results demonstrated robust differences between NTS and LGS, which revealed that a kind of cryptic species existed. Maximum likelihood (ML) and Bayesian inference (BI) analyses produced well-supported phylogenetic trees that showed evolutionary relationships between Siphluriscidae ((( HQ875717 + MF352165) + LGS) + NTS). The most recent common ancestor (MRCA) of four species within Siphluriscidae began to diversify during the Neogene [11.80 million years ago (Mya); 95% highest posterior densities (HPD) = 6.17-19.28 Mya], and NTS was first to diverge from the branches of LGS. In short, based on mitochondrial genomes, our results showed that the specimens collected from Leigong Mountain, Guizhou Province ( LGS) belonged to , and the specimens collected from Niutou Mountain, Zhejiang Province ( NTS) were a cryptic species of .

Citing Articles

Mitogenome-Based Phylogeny with Divergence Time Estimates Revealed the Presence of Cryptic Species within Heptageniidae (Insecta, Ephemeroptera).

Guo Z, Shen C, Cheng H, Chen Y, Wu H, Storey K Insects. 2024; 15(10).

PMID: 39452321 PMC: 11509038. DOI: 10.3390/insects15100745.


Comparative Mitogenome of Phylogenetic Relationships and Divergence Time Analysis within Potamanthidae (Insecta: Ephemeroptera).

Guo Z, Gao Y, Chen Y, Zhan L, Storey K, Yu D Insects. 2024; 15(5).

PMID: 38786913 PMC: 11122660. DOI: 10.3390/insects15050357.


The Phylogenetic Relationship of Lamiinae (Coleoptera: Cerambycidae) Using Mitochondrial Genomes.

Li K, Yu S, Hu H, Feng Y, Storey K, Ma Y Genes (Basel). 2024; 15(1).

PMID: 38275595 PMC: 10815127. DOI: 10.3390/genes15010013.


Complete Mitogenomes of Ticks and Parasitizing Giant Panda: Deep Insights into the Comparative Mitogenomic and Phylogenetic Relationship of Ixodidae Species.

Liu J, Yu J, Yu X, Bi W, Yang H, Xue F Genes (Basel). 2022; 13(11).

PMID: 36360286 PMC: 9691169. DOI: 10.3390/genes13112049.

References
1.
Xu X, Jia Y, Cao S, Zhang Z, Storey K, Yu D . Six complete mitochondrial genomes of mayflies from three genera of Ephemerellidae (Insecta: Ephemeroptera) with inversion and translocation of rearrangement and their phylogenetic relationships. PeerJ. 2020; 8:e9740. PMC: 7443110. DOI: 10.7717/peerj.9740. View

2.
Zhang J, Zhou C, Gai Y, Song D, Zhou K . The complete mitochondrial genome of Parafronurus youi (Insecta: Ephemeroptera) and phylogenetic position of the Ephemeroptera. Gene. 2008; 424(1-2):18-24. DOI: 10.1016/j.gene.2008.07.037. View

3.
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S . Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012; 28(12):1647-9. PMC: 3371832. DOI: 10.1093/bioinformatics/bts199. View

4.
Ronquist F, Teslenko M, van der Mark P, Ayres D, Darling A, Hohna S . MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012; 61(3):539-42. PMC: 3329765. DOI: 10.1093/sysbio/sys029. View

5.
Lorenzo-Carballa M, Thompson D, Cordero-Rivera A, Watts P . Next generation sequencing yields the complete mitochondrial genome of the scarce blue-tailed damselfly, Ischnura pumilio. Mitochondrial DNA. 2013; 25(4):247-8. DOI: 10.3109/19401736.2013.796518. View