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Density-of-states Similarity Descriptor for Unsupervised Learning from Materials Data

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Journal Sci Data
Specialty Science
Date 2022 Oct 23
PMID 36273207
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Abstract

We develop a materials descriptor based on the electronic density-of-states (DOS) and investigate the similarity of materials based on it. As an application example, we study the Computational 2D Materials Database (C2DB) that hosts thousands of two-dimensional materials with their properties calculated by density-functional theory. Combining our descriptor with a clustering algorithm, we identify groups of materials with similar electronic structure. We introduce additional descriptors to characterize these clusters in terms of crystal structures, atomic compositions, and electronic configurations of their members. This allows us to rationalize the found (dis)similarities and to perform an automated exploratory and confirmatory analysis of the C2DB data. From this analysis, we find that the majority of clusters consist of isoelectronic materials sharing crystal symmetry, but we also identify outliers, i.e., materials whose similarity cannot be explained in this way.

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References
1.
Yang W, Parr R . Hardness, softness, and the fukui function in the electronic theory of metals and catalysis. Proc Natl Acad Sci U S A. 1985; 82(20):6723-6. PMC: 390758. DOI: 10.1073/pnas.82.20.6723. View

2.
Bender A, Glen R . Molecular similarity: a key technique in molecular informatics. Org Biomol Chem. 2004; 2(22):3204-18. DOI: 10.1039/B409813G. View

3.
Cohen , Kudrnovsky . Orbital symmetry, reactivity, and transition metal surface chemistry. Phys Rev Lett. 1994; 72(20):3222-3225. DOI: 10.1103/PhysRevLett.72.3222. View

4.
Maggiora G, Vogt M, Stumpfe D, Bajorath J . Molecular similarity in medicinal chemistry. J Med Chem. 2013; 57(8):3186-204. DOI: 10.1021/jm401411z. View

5.
Enkovaara J, Rostgaard C, Mortensen J, Chen J, Dulak M, Ferrighi L . Electronic structure calculations with GPAW: a real-space implementation of the projector augmented-wave method. J Phys Condens Matter. 2011; 22(25):253202. DOI: 10.1088/0953-8984/22/25/253202. View