CompareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets

Overview

Journal J Proteome Res

Publisher American Chemical Society

Specialty Biochemistry

Date 2022 Sep 29

PMID 36173614

Authors

Rob Marissen

Madhushri S Varunjikar

Jeroen F J Laros

Josef D Rasinger

Benjamin A Neely

Magnus Palmblad

Affiliations

Soon will be listed here.

Abstract

It has long been known that biological species can be identified from mass spectrometry data alone. Ten years ago, we described a method and software tool, compareMS2, for calculating a distance between sets of tandem mass spectra, as routinely collected in proteomics. This method has seen use in species identification and mixture characterization in food and feed products, as well as other applications. Here, we present the first major update of this software, including a new metric, a graphical user interface and additional functionality. The data have been deposited to ProteomeXchange with dataset identifier PXD034932.

Citing Articles

Shotgun Proteomics Protocol for Insects.

Varunjikar M, Belghit I, Oveland E, Palmblad M, Rasinger J Methods Mol Biol. 2024; 2884:81-98.

PMID: 39715999 DOI: 10.1007/978-1-0716-4298-6_7.

Unveiling the potential of proteomics in addressing food and feed safety challenges.

Perkons I, Varunjikar M, Rasinger J EFSA J. 2023; 21(Suppl 1):e211013.

PMID: 38047126 PMC: 10687763. DOI: 10.2903/j.efsa.2023.e211013.

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