» Articles » PMID: 35659747

DsSurvival: Privacy Preserving Survival Models for Federated Individual Patient Meta-analysis in DataSHIELD

Overview
Journal BMC Res Notes
Publisher Biomed Central
Date 2022 Jun 6
PMID 35659747
Authors
Affiliations
Soon will be listed here.
Abstract

Objective: Achieving sufficient statistical power in a survival analysis usually requires large amounts of data from different sites. Sensitivity of individual-level data, ethical and practical considerations regarding data sharing across institutions could be a potential challenge for achieving this added power. Hence we implemented a federated meta-analysis approach of survival models in DataSHIELD, where only anonymous aggregated data are shared across institutions, while simultaneously allowing for exploratory, interactive modelling. In this case, meta-analysis techniques to combine analysis results from each site are a solution, but an analytic workflow involving local analysis undertaken at individual studies hinders exploration. Thus, the aim is to provide a framework for performing meta-analysis of Cox regression models across institutions without manual analysis steps for the data providers.

Results: We introduce a package (dsSurvival) which allows privacy preserving meta-analysis of survival models, including the calculation of hazard ratios. Our tool can be of great use in biomedical research where there is a need for building survival models and there are privacy concerns about sharing data.

Citing Articles

Federated privacy-protected meta- and mega-omics data analysis in multi-center studies with a fully open-source analytic platform.

Escriba-Montagut X, Marcon Y, Anguita-Ruiz A, Avraam D, Urquiza J, Morgan A PLoS Comput Biol. 2024; 20(12):e1012626.

PMID: 39652598 PMC: 11658699. DOI: 10.1371/journal.pcbi.1012626.


Capability and accuracy of usual statistical analyses in a real-world setting using a federated approach.

Jegou R, Bachot C, Monteil C, Boernert E, Chmiel J, Boucher M PLoS One. 2024; 19(11):e0312697.

PMID: 39541283 PMC: 11563485. DOI: 10.1371/journal.pone.0312697.


Federated difference-in-differences with multiple time periods in DataSHIELD.

Huth M, Garavito C, Seep L, Cirera L, Saute F, Sicuri E iScience. 2024; 27(11):111025.

PMID: 39498304 PMC: 11532944. DOI: 10.1016/j.isci.2024.111025.


Stress and anxiety during pregnancy and length of gestation: a federated study using data from five Canadian and European birth cohorts.

Bergeron J, Avraam D, Calas L, Fraser W, Harris J, Heude B Eur J Epidemiol. 2024; 39(7):773-783.

PMID: 38805076 PMC: 11344005. DOI: 10.1007/s10654-024-01126-4.


dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system.

Banerjee S, Bishop T BMC Res Notes. 2023; 16(1):98.

PMID: 37280717 PMC: 10243006. DOI: 10.1186/s13104-023-06372-5.

References
1.
Blasimme A, Fadda M, Schneider M, Vayena E . Data Sharing For Precision Medicine: Policy Lessons And Future Directions. Health Aff (Millwood). 2018; 37(5):702-709. DOI: 10.1377/hlthaff.2017.1558. View

2.
Banerjee S, Bishop T . dsSynthetic: synthetic data generation for the DataSHIELD federated analysis system. BMC Res Notes. 2022; 15(1):230. PMC: 9235208. DOI: 10.1186/s13104-022-06111-2. View

3.
Hartmann O, Schuetz P, Albrich W, Anker S, Mueller B, Schmidt T . Time-dependent Cox regression: serial measurement of the cardiovascular biomarker proadrenomedullin improves survival prediction in patients with lower respiratory tract infection. Int J Cardiol. 2012; 161(3):166-73. DOI: 10.1016/j.ijcard.2012.09.014. View

4.
Gaye A, Marcon Y, Isaeva J, Laflamme P, Turner A, Jones E . DataSHIELD: taking the analysis to the data, not the data to the analysis. Int J Epidemiol. 2014; 43(6):1929-44. PMC: 4276062. DOI: 10.1093/ije/dyu188. View

5.
Altman D, De Stavola B, Love S, Stepniewska K . Review of survival analyses published in cancer journals. Br J Cancer. 1995; 72(2):511-8. PMC: 2033978. DOI: 10.1038/bjc.1995.364. View