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Molecular Methodologies for Improved Polymicrobial Sepsis Diagnosis

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2022 May 14
PMID 35562877
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Abstract

Polymicrobial sepsis is associated with worse patient outcomes than monomicrobial sepsis. Routinely used culture-dependent microbiological diagnostic techniques have low sensitivity, often leading to missed identification of all causative organisms. To overcome these limitations, culture-independent methods incorporating advanced molecular technologies have recently been explored. However, contamination, assay inhibition and interference from host DNA are issues that must be addressed before these methods can be relied on for routine clinical use. While the host component of the complex sepsis host-pathogen interplay is well described, less is known about the pathogen's role, including pathogen-pathogen interactions in polymicrobial sepsis. This review highlights the clinical significance of polymicrobial sepsis and addresses how promising alternative molecular microbiology methods can be improved to detect polymicrobial infections. It also discusses how the application of shotgun metagenomics can be used to uncover pathogen/pathogen interactions in polymicrobial sepsis cases and their potential role in the clinical course of this condition.

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References
1.
Queck S, Khan B, Wang R, Bach T, Kretschmer D, Chen L . Mobile genetic element-encoded cytolysin connects virulence to methicillin resistance in MRSA. PLoS Pathog. 2009; 5(7):e1000533. PMC: 2712073. DOI: 10.1371/journal.ppat.1000533. View

2.
Loonen A, Jansz A, Stalpers J, Wolffs P, van den Brule A . An evaluation of three processing methods and the effect of reduced culture times for faster direct identification of pathogens from BacT/ALERT blood cultures by MALDI-TOF MS. Eur J Clin Microbiol Infect Dis. 2011; 31(7):1575-83. PMC: 3364411. DOI: 10.1007/s10096-011-1480-y. View

3.
Xie F, Duan Z, Zeng W, Xie S, Xie M, Fu H . Clinical metagenomics assessments improve diagnosis and outcomes in community-acquired pneumonia. BMC Infect Dis. 2021; 21(1):352. PMC: 8047593. DOI: 10.1186/s12879-021-06039-1. View

4.
Oz Y, Onder S, Alpaslan E, Durmaz G . Does concomitant bacteraemia hide the fungi in blood cultures? An in vitro study. J Med Microbiol. 2020; 69(7):944-948. DOI: 10.1099/jmm.0.001210. View

5.
Boardman A, Campbell J, Wirz H, Sharon A, Sauer-Budge A . Rapid microbial sample preparation from blood using a novel concentration device. PLoS One. 2015; 10(2):e0116837. PMC: 4326418. DOI: 10.1371/journal.pone.0116837. View