The Complete Plastid Genome Sequence of Nakai (Apiaceae), an Endemic and Rare Species in Korea
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Abstract
Nakai is one of the rare species in the Korean Peninsula. This study characterized the complete plastid genome (plastome) sequence of by assembly with next-generation sequencing data. The complete plastome of is 147,426 bp in length with a typical quadripartite structure comprising a large single-copy region of 91,915 bp, a small single-copy region of 17,425 bp, and two inverted repeat regions of 19,043 bp in length. The plastome of is composed of 85 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The phylogenetic analysis revealed that two species formed an independent subclade, sister to the subclade of species within the tribe Selineae.
References
1.
Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones E, Fischer A, Bock R
. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 2017; 45(W1):W6-W11.
PMC: 5570176.
DOI: 10.1093/nar/gkx391.
View
2.
Darriba D, Taboada G, Doallo R, Posada D
. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012; 9(8):772.
PMC: 4594756.
DOI: 10.1038/nmeth.2109.
View
3.
Kurtz S, Phillippy A, Delcher A, Smoot M, Shumway M, Antonescu C
. Versatile and open software for comparing large genomes. Genome Biol. 2004; 5(2):R12.
PMC: 395750.
DOI: 10.1186/gb-2004-5-2-r12.
View
4.
Allen G, Flores-Vergara M, Krasynanski S, Kumar S, Thompson W
. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat Protoc. 2007; 1(5):2320-5.
DOI: 10.1038/nprot.2006.384.
View
5.
Wen J, Xie D, Price M, Ren T, Deng Y, Gui L
. Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data. Mol Phylogenet Evol. 2021; 161:107183.
DOI: 10.1016/j.ympev.2021.107183.
View