» Articles » PMID: 35552390

Active Conformation of the P97-p47 Unfoldase Complex

Overview
Journal Nat Commun
Specialty Biology
Date 2022 May 13
PMID 35552390
Authors
Affiliations
Soon will be listed here.
Abstract

The p97 AAA+ATPase is an essential and abundant regulator of protein homeostasis that plays a central role in unfolding ubiquitylated substrates. Here we report two cryo-EM structures of human p97 in complex with its p47 adaptor. One of the conformations is six-fold symmetric, corresponds to previously reported structures of p97, and lacks bound substrate. The other structure adopts a helical conformation, displays substrate running in an extended conformation through the pore of the p97 hexamer, and resembles structures reported for other AAA unfoldases. These findings support the model that p97 utilizes a "hand-over-hand" mechanism in which two residues of the substrate are translocated for hydrolysis of two ATPs, one in each of the two p97 AAA ATPase rings. Proteomics analysis supports the model that one p97 complex can bind multiple substrate adaptors or binding partners, and can process substrates with multiple types of ubiquitin modification.

Citing Articles

Visualization of the Cdc48 AAA+ ATPase protein unfolding pathway.

Cooney I, Schubert H, Cedeno K, Fisher O, Carson R, Price J Nat Commun. 2024; 15(1):7505.

PMID: 39209885 PMC: 11362554. DOI: 10.1038/s41467-024-51835-3.


Mechanism of allosteric inhibition of human p97/VCP ATPase and its disease mutant by triazole inhibitors.

Nandi P, DeVore K, Wang F, Li S, Walker J, Truong T Commun Chem. 2024; 7(1):177.

PMID: 39122922 PMC: 11316111. DOI: 10.1038/s42004-024-01267-3.


Structural and mechanistic studies on human LONP1 redefine the hand-over-hand translocation mechanism.

Mindrebo J, Lander G bioRxiv. 2024; .

PMID: 38979310 PMC: 11230189. DOI: 10.1101/2024.06.24.600538.


Valosin-Containing Protein (VCP)/p97 Oligomerization.

Yu G, Bai Y, Zhang Z Subcell Biochem. 2024; 104:485-501.

PMID: 38963497 DOI: 10.1007/978-3-031-58843-3_18.


A non-symmetrical p97 conformation initiates a multistep recruitment of Ufd1/Npl4.

Arie M, Matzov D, Karmona R, Szenkier N, Stanhill A, Navon A iScience. 2024; 27(6):110061.

PMID: 38947518 PMC: 11214410. DOI: 10.1016/j.isci.2024.110061.


References
1.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View

2.
Punjani A, Rubinstein J, Fleet D, Brubaker M . cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat Methods. 2017; 14(3):290-296. DOI: 10.1038/nmeth.4169. View

3.
Ripstein Z, Huang R, Augustyniak R, Kay L, Rubinstein J . Structure of a AAA+ unfoldase in the process of unfolding substrate. Elife. 2017; 6. PMC: 5423775. DOI: 10.7554/eLife.25754. View

4.
Weith M, Seiler J, Boom J, Kracht M, Hulsmann J, Primorac I . Ubiquitin-Independent Disassembly by a p97 AAA-ATPase Complex Drives PP1 Holoenzyme Formation. Mol Cell. 2018; 72(4):766-777.e6. DOI: 10.1016/j.molcel.2018.09.020. View

5.
Twomey E, Ji Z, Wales T, Bodnar N, Ficarro S, Marto J . Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science. 2019; 365(6452). PMC: 6980381. DOI: 10.1126/science.aax1033. View