Decorating a Single Giant DNA with Gold Nanoparticles
Overview
Authors
Affiliations
We decorated a single giant DNA (1.66 × 10 base pairs) with gold nanoparticles through the simple procedure of mild warming, without denaturation of the DNA molecule. Single-molecule observation with fluorescence microscopy revealed that individual decorated DNA molecules stay in the bulk solution by avoiding aggregation and precipitation, and exhibit translational and conformational fluctuation, , Brownian motion. An analysis of the intra-chain fluctuation of single DNA molecules revealed that the apparent spring constant and damping coefficient of a DNA chain increased by 13- and 5-fold, respectively, upon decoration with gold nanoparticles. Observation by transmission electron microscopy revealed that gold nanoparticles were stably attached to the DNA skeleton. UV-visible measurements revealed the absence of any detectable change in surface plasmon resonance, suggesting that the gold nanoparticles assemble without the formation of a densely packed aggregate. CD measurements showed that the secondary structure of decorated DNA is still essentially the B-form.
Characteristic effect of hydroxyurea on the higher-order structure of DNA and gene expression.
Ogawa H, Nishio T, Yoshikawa Y, Sadakane K, Kenmotsu T, Koga T Sci Rep. 2024; 14(1):13826.
PMID: 38879539 PMC: 11180115. DOI: 10.1038/s41598-024-64538-y.
Negahdary M, Hirata M, Sakata S, Ciconelli R, Bastos G, Bassani Borges J Anal Chim Acta. 2023; 1242:340716.
PMID: 36657883 PMC: 9729787. DOI: 10.1016/j.aca.2022.340716.
Fujino K, Nishio T, Fujioka K, Yoshikawa Y, Kenmotsu T, Yoshikawa K Polymers (Basel). 2023; 15(1).
PMID: 36616499 PMC: 9823369. DOI: 10.3390/polym15010149.
Direct visualization of local activities of long DNA strands via image-time correlation.
Kang K, Ma Y, Sadakane K Eur Biophys J. 2021; 50(8):1139-1155.
PMID: 34499211 PMC: 8566448. DOI: 10.1007/s00249-021-01570-0.
Effect of DNA Flexibility on Complex Formation of a Cationic Nanoparticle with Double-Stranded DNA.
Bae S, Oh I, Yoo J, Kim J ACS Omega. 2021; 6(29):18728-18736.
PMID: 34337212 PMC: 8319935. DOI: 10.1021/acsomega.1c01709.