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Genome-Based Classification of Strain 16-SW-7, a Marine Bacterium Capable of Converting B Red Blood Cells, As and Proposal to Reclassify As a Later Heterotypic Synonym of

Overview
Journal Front Microbiol
Specialty Microbiology
Date 2022 Feb 28
PMID 35222308
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Abstract

A strictly aerobic, Gram-stain-negative, rod-shaped, and motile bacterium, designated strain 16-SW-7, isolated from a seawater sample, was investigated in detail due to its ability to produce a unique α-galactosidase converting B red blood cells into the universal type blood cells. The phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain 16-SW-7 is a member of the genus . The closest relatives of the environmental isolate were KMM 638 and KMM 3548, with the plural paralogous 16S rRNA genes of 99.87-100% similarity. The strain 16-SW-7 grew with 1-10% NaCl and at 4-34°C, and hydrolyzed casein, gelatin, tyrosine, and DNA. The genomic DNA G+C content was 39.3 mol%. The prevalent fatty acids were C ω7, C, C ω8, C ω7, C, and C 3-OH. The polar lipid profile was characterized by the presence of phosphatidylethanolamine, phosphatidylglycerol, two unidentified amino lipids, and three unidentified lipids. The major respiratory quinone was Q-8. The finished genome of the strain 16-SW-7 (GenBank assembly accession number: GCA_005877035.1) has a size of 4,531,445 bp and comprises two circular chromosomes L1 and S1, deposited in the GenBank under the accession numbers CP040558 and CP040559, respectively. The strain 16-SW-7 has the ANI values of 98.2% with KMM 638 and KMM 3548 and the DDH values of 84.4 and 83.5%, respectively, indicating clearly that the three strains belonged to a single species. According to phylogenetic evidence and similarity for the chemotaxonomic and genotypic properties, the strain 16-SW-7 (= KCTC 52772 = KMM 701) represents a novel member of the species . Also, we have proposed to reclassify as a later heterotypic synonym of based on the rules of priority with the emendation of the species.

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References
1.
Hwang C, Lee I, Hwang Y, Yoon S, Lee W, Cho B . Pseudoalteromonas neustonica sp. nov., isolated from the sea surface microlayer of the Ross Sea (Antarctica), and emended description of the genus Pseudoalteromonas. Int J Syst Evol Microbiol. 2016; 66(9):3377-3382. DOI: 10.1099/ijsem.0.001202. View

2.
Medlar A, Toronen P, Holm L . AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination. Nucleic Acids Res. 2018; 46(W1):W479-W485. PMC: 6030964. DOI: 10.1093/nar/gky359. View

3.
Murray I, Luyten Y, Fomenkov A, Dai N, Correa Jr I, Farmerie W . Structural and functional diversity among Type III restriction-modification systems that confer host DNA protection via methylation of the N4 atom of cytosine. PLoS One. 2021; 16(7):e0253267. PMC: 8259958. DOI: 10.1371/journal.pone.0253267. View

4.
Schoner T, Gassel S, Osawa A, Tobias N, Okuno Y, Sakakibara Y . Aryl Polyenes, a Highly Abundant Class of Bacterial Natural Products, Are Functionally Related to Antioxidative Carotenoids. Chembiochem. 2015; 17(3):247-53. DOI: 10.1002/cbic.201500474. View

5.
Wetzel K, Bjorge D, Schwan W . Mutational and transcriptional analyses of the Staphylococcus aureus low-affinity proline transporter OpuD during in vitro growth and infection of murine tissues. FEMS Immunol Med Microbiol. 2011; 61(3):346-55. PMC: 3055929. DOI: 10.1111/j.1574-695X.2011.00781.x. View