Genome-Based Classification of Strain 16-SW-7, a Marine Bacterium Capable of Converting B Red Blood Cells, As and Proposal to Reclassify As a Later Heterotypic Synonym of
Overview
Authors
Affiliations
A strictly aerobic, Gram-stain-negative, rod-shaped, and motile bacterium, designated strain 16-SW-7, isolated from a seawater sample, was investigated in detail due to its ability to produce a unique α-galactosidase converting B red blood cells into the universal type blood cells. The phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain 16-SW-7 is a member of the genus . The closest relatives of the environmental isolate were KMM 638 and KMM 3548, with the plural paralogous 16S rRNA genes of 99.87-100% similarity. The strain 16-SW-7 grew with 1-10% NaCl and at 4-34°C, and hydrolyzed casein, gelatin, tyrosine, and DNA. The genomic DNA G+C content was 39.3 mol%. The prevalent fatty acids were C ω7, C, C ω8, C ω7, C, and C 3-OH. The polar lipid profile was characterized by the presence of phosphatidylethanolamine, phosphatidylglycerol, two unidentified amino lipids, and three unidentified lipids. The major respiratory quinone was Q-8. The finished genome of the strain 16-SW-7 (GenBank assembly accession number: GCA_005877035.1) has a size of 4,531,445 bp and comprises two circular chromosomes L1 and S1, deposited in the GenBank under the accession numbers CP040558 and CP040559, respectively. The strain 16-SW-7 has the ANI values of 98.2% with KMM 638 and KMM 3548 and the DDH values of 84.4 and 83.5%, respectively, indicating clearly that the three strains belonged to a single species. According to phylogenetic evidence and similarity for the chemotaxonomic and genotypic properties, the strain 16-SW-7 (= KCTC 52772 = KMM 701) represents a novel member of the species . Also, we have proposed to reclassify as a later heterotypic synonym of based on the rules of priority with the emendation of the species.
Handayani D, Isnansetyo A, Istiqomah I BMC Genomics. 2024; 25(1):364.
PMID: 38615000 PMC: 11015633. DOI: 10.1186/s12864-024-10266-6.
Balabanova L, Nedashkovskaya O, Otstavnykh N, Isaeva M, Kolpakova O, Pentehina I Int J Mol Sci. 2023; 24(4).
PMID: 36835570 PMC: 9966250. DOI: 10.3390/ijms24044158.