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Genomic Sequence and Transcriptome Analysis of the Medicinal Fungus Keithomyces Neogunnii

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Date 2022 Feb 24
PMID 35201278
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Abstract

The filamentous fungus Keithomyces neogunnii can infect the larvae of Lepidoptera (Hepialus sp.) and form an insect-fungi complex, which is utilized as an important traditional Chinese medicine. As a valuable medicinal fungus, K. neogunnii produces diverse bioactive substances (e.g., polysaccharide, vitamins, cordycepic acid, and adenosine) under cultivation conditions. Herein, we report the first high-quality genome of the K. neogunnii single-spore isolate Cg7.2a using single-molecule real-time sequencing technology in combination with Illumina sequencing. The assembled genome was 32.6 Mb in size, containing 8,641 predicted genes and having a GC content of 52.16%. RNA sequencing analysis revealed the maximum number of differentially expressed genes in the fungus during the stroma formation stage compared with those during the mycelium stage. These data are valuable to enhance our understanding of the biology, development, evolution, and physiological metabolism of K. neogunnii.

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References
1.
Chan P, Lowe T . tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences. Methods Mol Biol. 2019; 1962:1-14. PMC: 6768409. DOI: 10.1007/978-1-4939-9173-0_1. View

2.
Li X, Liu Q, Li W, Li Q, Qian Z, Liu X . A breakthrough in the artificial cultivation of Chinese cordyceps on a large-scale and its impact on science, the economy, and industry. Crit Rev Biotechnol. 2018; 39(2):181-191. DOI: 10.1080/07388551.2018.1531820. View

3.
Lu Y, Luo F, Cen K, Xiao G, Yin Y, Li C . Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae. BMC Genomics. 2017; 18(1):668. PMC: 5577849. DOI: 10.1186/s12864-017-4060-4. View

4.
Xu Z, Zhu Y, Xuan L, Li S, Cheng Z . Haplotype Diversity of NADPH-Cytochrome P450 Reductase Gene of and the Effect on Fungal Infection in Host Insects. Microorganisms. 2020; 8(7). PMC: 7409138. DOI: 10.3390/microorganisms8070968. View

5.
Medema M, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach M . antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 2011; 39(Web Server issue):W339-46. PMC: 3125804. DOI: 10.1093/nar/gkr466. View