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Transcriptomic Mapping of Non-Small Cell Lung Cancer P.G12C Mutated Tumors: Identification of Surfaceome Targets and Immunologic Correlates

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Journal Front Immunol
Date 2022 Feb 18
PMID 35178045
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Abstract

Targeting K-RAS-mutant non-small cell lung cancer (NSCLC) with novel inhibitors has shown promising results with the recent approval of sotorasib in this indication. However, progression to this agent is expected, as it has previously been observed with other inhibitors. Recently, new immune therapeutics, including vectorized compounds with antibodies or modulators of the host immune response, have demonstrated clinical activity. By interrogating massive datasets, including TCGA, we identified genes that code for surface membrane proteins that are selectively expressed in K-RAS mutated NSCLC and that could be used to vectorize novel therapies. Two genes, and , were selected for their clear differentiation. In addition, we discovered immunologic correlates of outcome that were clearly de-regulated in this particular tumor type and we matched them with immune cell populations. In conclusion, our article describes membrane proteins and immunologic correlates that could be used to better select and optimize current therapies.

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References
1.
Chen E, Tan C, Kou Y, Duan Q, Wang Z, Meirelles G . Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013; 14:128. PMC: 3637064. DOI: 10.1186/1471-2105-14-128. View

2.
Skoulidis F, Li B, Dy G, Price T, Falchook G, Wolf J . Sotorasib for Lung Cancers with p.G12C Mutation. N Engl J Med. 2021; 384(25):2371-2381. PMC: 9116274. DOI: 10.1056/NEJMoa2103695. View

3.
Peter D, Jin S, Conti M, Hatzelmann A, Zitt C . Differential expression and function of phosphodiesterase 4 (PDE4) subtypes in human primary CD4+ T cells: predominant role of PDE4D. J Immunol. 2007; 178(8):4820-31. DOI: 10.4049/jimmunol.178.8.4820. View

4.
Chang L, Ruiz P, Ito T, Sellers W . Targeting pan-essential genes in cancer: Challenges and opportunities. Cancer Cell. 2021; 39(4):466-479. PMC: 8157671. DOI: 10.1016/j.ccell.2020.12.008. View

5.
Podojil J, Miller S . Potential targeting of B7-H4 for the treatment of cancer. Immunol Rev. 2017; 276(1):40-51. PMC: 5630270. DOI: 10.1111/imr.12530. View