» Articles » PMID: 35108407

Independent Gradient Model Based on Hirshfeld Partition: A New Method for Visual Study of Interactions in Chemical Systems

Overview
Journal J Comput Chem
Publisher Wiley
Specialties Biology
Chemistry
Date 2022 Feb 2
PMID 35108407
Authors
Affiliations
Soon will be listed here.
Abstract

The powerful independent gradient model (IGM) method has been increasingly popular in visual analysis of intramolecular and intermolecular interactions in recent years. However, we frequently observed that there is an evident shortcoming of IGM map in graphically studying weak interactions, that is its isosurfaces are usually too bulgy; in these cases, not only the graphical effect is poor, but also the color on some areas on the isosurfaces is inappropriate and may lead to erroneous analysis conclusions. In addition, the IGM method was originally proposed based on promolecular density, which is quite crude and does not take actual electronic structure into account. In this article, we propose an improvement version of IGM, namely IGM based on Hirshfeld partition of molecular density (IGMH), which replaces the free-state atomic densities involved in the IGM method with the atomic densities derived by Hirshfeld partition of actual molecular electron density. This change makes IGM have more rigorous physical background. A large number of application examples in this article, including molecular and periodic systems, weak and chemical bond interactions, fully demonstrate the important value of IGMH in intuitively understanding interactions in chemical systems. Comparisons also showed that the IGMH usually has markedly better graphical effect than IGM and overcomes known problems in IGM. Currently IGMH analysis has been supported in our wavefunction analysis code Multiwfn (http://sobereva.com/multiwfn). We hope that IGMH will become a new useful method among chemists for exploring interactions in wide variety of chemical systems.

Citing Articles

Mechanism and dynamics of photoswitchable flavoprotein charge-transfer complexes.

Zhuang B, Ran G, Zhang W, Gai F Chem Sci. 2025; .

PMID: 40078609 PMC: 11894434. DOI: 10.1039/d4sc08614g.


Effect of Different Substituents on the Properties of 4-R-1,5-Diaminotetrazolium Pentazolate Salts.

Yuan X, Xu Z, Lu M, Xu Y Materials (Basel). 2025; 18(5).

PMID: 40077303 PMC: 11901200. DOI: 10.3390/ma18051077.


Theoretical study on the alkyl chain length impact of azobenzene-based photoresponsive ionic liquids.

Ying L, Ju Z, Lin C, Wang P, Cheng H, Ding L BMC Chem. 2025; 19(1):66.

PMID: 40065359 PMC: 11895348. DOI: 10.1186/s13065-025-01433-1.


Palladium-catalyzed enantioselective β-hydride elimination for the construction of remote stereocenters.

Sun S, Sun S, Zi W Nat Commun. 2025; 16(1):2227.

PMID: 40044712 PMC: 11882921. DOI: 10.1038/s41467-025-57437-x.


Regulation of lanthanide supramolecular nanoreactors via a bimetallic cluster cutting strategy to boost aza-Darzens reactions.

Li J, Kou M, Zhou S, Dong F, Huang X, Tang X Nat Commun. 2025; 16(1):2169.

PMID: 40038263 PMC: 11880432. DOI: 10.1038/s41467-024-54950-3.