» Articles » PMID: 34887891

QTL Analysis of Five Silique-Related Traits in L. Across Multiple Environments

Overview
Journal Front Plant Sci
Date 2021 Dec 10
PMID 34887891
Citations 5
Authors
Affiliations
Soon will be listed here.
Abstract

As an important physiological and reproductive organ, the silique is a determining factor of seed yield and a breeding target trait in rapeseed ( L.). Genetic studies of silique-related traits are helpful for rapeseed marker-assisted high-yield breeding. In this study, a recombinant inbred population containing 189 lines was used to perform a quantitative trait loci (QTLs) analysis for five silique-related traits in seven different environments. As a result, 120 consensus QTLs related to five silique-related traits were identified, including 23 for silique length, 25 for silique breadth, 29 for silique thickness, 22 for seed number per silique and 21 for silique volume, which covered all the chromosomes, except C5. Among them, 13 consensus QTLs, one, five, two, four and one for silique length, silique breadth, silique thickness, seed number per silique and silique volume, respectively, were repeatedly detected in multiple environments and explained 4.38-13.0% of the phenotypic variation. On the basis of the functional annotations of homologous genes and previously reported silique-related genes, 12 potential candidate genes underlying these 13 QTLs were screened and found to be stable in multiple environments by analyzing the re-sequencing results of the two parental lines. These findings provide new insights into the gene networks affecting silique-related traits at the QTL level in rapeseed.

Citing Articles

Unlocking the power of AI for phenotyping fruit morphology in Arabidopsis.

Atkins K, Garzon-Martinez G, Lloyd A, Doonan J, Lu C Gigascience. 2025; 14.

PMID: 39937596 PMC: 11816797. DOI: 10.1093/gigascience/giae123.


Integrating GWAS, RNA-Seq and functional analysis revealed that BnaA02.SE mediates silique elongation by affecting cell proliferation and expansion in Brassica napus.

Zhang L, Yang B, Li X, Chen S, Zhang C, Xiang S Plant Biotechnol J. 2024; 22(10):2907-2920.

PMID: 38899717 PMC: 11536457. DOI: 10.1111/pbi.14413.


Dissection of QTLs conferring drought tolerance in B. carinata derived B. juncea introgression lines.

Limbalkar O, Vasisth P, Singh G, Jain P, Sharma M, Singh R BMC Plant Biol. 2023; 23(1):664.

PMID: 38129793 PMC: 10740311. DOI: 10.1186/s12870-023-04614-z.


Genome-Wide Association Studies of Salt Tolerance at the Seed Germination Stage and Yield-Related Traits in L.

Zhang Y, Li P, Zhang J, Li Y, Xu A, Huang Z Int J Mol Sci. 2022; 23(24).

PMID: 36555533 PMC: 9785822. DOI: 10.3390/ijms232415892.


Construction of ultra-high-density genetic linkage map of a sorghum-sudangrass hybrid using whole genome resequencing.

Lu Q, Yu X, Wang H, Yu Z, Zhang X, Zhao Y PLoS One. 2022; 17(11):e0278153.

PMID: 36445892 PMC: 9707794. DOI: 10.1371/journal.pone.0278153.


References
1.
Seymour G, Poole M, Manning K, King G . Genetics and epigenetics of fruit development and ripening. Curr Opin Plant Biol. 2007; 11(1):58-63. DOI: 10.1016/j.pbi.2007.09.003. View

2.
Cai G, Yang Q, Chen H, Yang Q, Zhang C, Fan C . Genetic dissection of plant architecture and yield-related traits in Brassica napus. Sci Rep. 2016; 6:21625. PMC: 4754947. DOI: 10.1038/srep21625. View

3.
Danecek P, McCarthy S . BCFtools/csq: haplotype-aware variant consequences. Bioinformatics. 2017; 33(13):2037-2039. PMC: 5870570. DOI: 10.1093/bioinformatics/btx100. View

4.
Gonzalez-Guzman M, Pizzio G, Antoni R, Vera-Sirera F, Merilo E, Bassel G . Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. Plant Cell. 2012; 24(6):2483-96. PMC: 3406898. DOI: 10.1105/tpc.112.098574. View

5.
Shi L, Song J, Guo C, Wang B, Guan Z, Yang P . A CACTA-like transposable element in the upstream region of BnaA9.CYP78A9 acts as an enhancer to increase silique length and seed weight in rapeseed. Plant J. 2019; 98(3):524-539. DOI: 10.1111/tpj.14236. View