» Articles » PMID: 34869577

Prognostic Potential of Secreted Modular Calcium-Binding Protein 1 in Low-Grade Glioma

Overview
Specialty Biology
Date 2021 Dec 6
PMID 34869577
Citations 9
Authors
Affiliations
Soon will be listed here.
Abstract

Secreted modular calcium-binding protein 1 (SMOC1) belongs to a family of matricellular proteins; it was involved in embryo development, endothelial cell proliferation, angiogenesis, integrin-matrix interactions, cell adhesion, and regulation of glucose metabolism. Previous studies showed that the expression of SMOC1 was increased in some tumors. However, the prognostic value and the biological function of SMOC1 in tumor remain unclear. In this study, we explored the expression profile and prognostic value of SMOC1 in pan-cancers, especially glioma, multiple databases, including Oncomine, Gene Expression Profiling Interactive 2, PrognoScan, Kaplan-Meier plotter, and the Chinese Glioma Genome Atlas database. Furthermore, LinkedOmics was used to identify the genes coexpressed with SMOC1 and to perform Kyoto Encyclopedia of Genes and Genomes pathways and Gene Ontology analysis in low-grade glioma (LGG). Also, the Cancer Single-Cell State Atlas database was used to evaluate the correlation between SMOC1 expression and functional state activities in glioma cells. In addition, the Tumor Immune Estimation Resource and TISIDB databases were used to evaluate the correlations between SMOC1 expression and tumor-infiltrating immune cells in the tumor microenvironment. Compared with normal brain tissues, the expression of SMOC1 was increased in LGG tissues. The higher expression of SMOC1 was significantly correlated with better survival of LGG patients. Additionally, functional analyses showed that the SMOC1 coexpressed genes were inhibited in processes such as response to type I interferon and interferon-gamma, lymphocyte-mediated immunity, leukocyte migration, adaptive immune response, neutrophil-mediated immunity, T cell activation, and pathways including EMC-receptor interaction, Th17 cell differentiation, and leukocyte -endothelial migration in LGG. Moreover, the expression of SMOC1 was correlated with stemness, hypoxia, EMT, and metastasis of glioma cells. Additionally, the expression of SMOC1 expression was negatively correlated with levels of infiltrating B cells, CD8 T cells, CD4 T cells, macrophages, neutrophils and dendritic cells, and gene markers of most immune cells in LGG. Our results suggest that SMOC1 could be a potential biomarker to determine prognosis and might play a specific role in the tumor microenvironment of glioma, thereby influencing the development and progression of glioma. These findings provide some new insights for further investigation.

Citing Articles

SMOC1 colocalizes with Alzheimer's disease neuropathology and delays Aβ aggregation.

Balcomb K, Johnston C, Kavanagh T, Leitner D, Schneider J, Halliday G Acta Neuropathol. 2024; 148(1):72.

PMID: 39585417 PMC: 11588930. DOI: 10.1007/s00401-024-02819-6.


Spatial transcriptomics analysis identifies therapeutic targets in diffuse high-grade gliomas.

Yang Y, Hong Y, Zhao K, Huang M, Li W, Zhang K Front Mol Neurosci. 2024; 17:1466302.

PMID: 39530009 PMC: 11552449. DOI: 10.3389/fnmol.2024.1466302.


A patient-derived cell model for malignant transformation in IDH-mutant glioma.

Kim O, Sergi Z, Yu G, Yamamoto K, Quezado M, Abdullaev Z Acta Neuropathol Commun. 2024; 12(1):148.

PMID: 39256867 PMC: 11385154. DOI: 10.1186/s40478-024-01860-6.


Blood leukocytes as a non-invasive diagnostic tool for thyroid nodules: a prospective cohort study.

Wang F, Zhao D, Xu W, Liu Y, Sun H, Lu S BMC Med. 2024; 22(1):147.

PMID: 38561764 PMC: 10986011. DOI: 10.1186/s12916-024-03368-1.


Downregulation of SMOC1 is associated with progression of colorectal traditional serrated adenomas.

Aoki H, Takasawa A, Yamamoto E, Niinuma T, Yamano H, Harada T BMC Gastroenterol. 2024; 24(1):91.

PMID: 38429655 PMC: 10905814. DOI: 10.1186/s12876-024-03175-1.


References
1.
Aoki H, Yamamoto E, Takasawa A, Niinuma T, Yamano H, Harada T . Epigenetic silencing of in traditional serrated adenoma and colorectal cancer. Oncotarget. 2018; 9(4):4707-4721. PMC: 5797007. DOI: 10.18632/oncotarget.23523. View

2.
Li T, Fan J, Wang B, Traugh N, Chen Q, Liu J . TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells. Cancer Res. 2017; 77(21):e108-e110. PMC: 6042652. DOI: 10.1158/0008-5472.CAN-17-0307. View

3.
Mizuno H, Kitada K, Nakai K, Sarai A . PrognoScan: a new database for meta-analysis of the prognostic value of genes. BMC Med Genomics. 2009; 2:18. PMC: 2689870. DOI: 10.1186/1755-8794-2-18. View

4.
Choi Y, Lim J, Kim K, Acharya B, Cho J, Bae Y . Secretome analysis of human BMSCs and identification of SMOC1 as an important ECM protein in osteoblast differentiation. J Proteome Res. 2010; 9(6):2946-56. DOI: 10.1021/pr901110q. View

5.
Nagy A, Lanczky A, Menyhart O, Gyorffy B . Validation of miRNA prognostic power in hepatocellular carcinoma using expression data of independent datasets. Sci Rep. 2018; 8(1):9227. PMC: 6003936. DOI: 10.1038/s41598-018-27521-y. View